Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2021 ATGTCTCCCTCCTGCGCCGCTACAGACTCCGTTGCCTCTGGCGAGATCATGCTGTTCGGGGTTCGAGTCGTCGTCGATTCCATGAGGAAGAGCGTCAGCATGAACAACCTCTCACAGTACGAGCATCCGCAAGACGGTAACAACAATAACAACACCAACAACATCAAAAAGGAAGTTCTCACCGCCGGTTATGCCTCAGCCGATGACGCTGTTCCTCATAACTCCGTCCGTCACCGCGAGCGGGAGCGGAAGCGAGGAGTTCCGTGGACGGAGGAAGAGCACAAACTGTTTTTGGTTGGATTGCAGAAGGTAGGGAAAGGTGATTGGAGAGGAATCTCCAAAAACTACGTGAAAACACGCACTCCGACGCAGGTTGCGAGCCATGCTCAGAAGTACTTTCTCCGCAGAAGCAACCTCAATCGCCGTCGTCGTAGATCCAGCCTATTCGACATCACCACCGACACGGTCTCTGCAGTTCTAATGGAGGATGAACAGGTCCAGAATCAAGACTCCCTGTCTCATCCACAACCTGTGTGCCCTGCAATTCCTGAAACTAGCAAAAGTGGATTTCCAATGATGCCAGTTTATCAGTTTGGGGTTGGTTCTGGAGTGATTTCAGTCCAAGGTGGGAAACCATTAGAAGAACTCACTCTGGGACAAGGAAACATAGAACACAAGGTGCCAATCAATCTGGTCCGTGCAATTCCTGTTGTTGCAGATCCTAAAGCACCCACAGTGTCTGATATCATCACCCCAAGTTCTGGTTCTGCAGTTGACCTACCCACACTGTCCTTGGGGCTATCCTTCTCTTCTGACCAAAGGCAAACATCATCAAGACATCCTGCTTTACATGCCATACCATGTTTCAGCAATGGAGATAGCGTCATTAGTGTTGCTTGA 900 0.5011 MSPSCAATDSVASGEIMLFGVRVVVDSMRKSVSMNNLSQYEHPQDGNNNNNTNNIKKEVLTAGYASADDAVPHNSVRHRERERKRGVPWTEEEHKLFLVGLQKVGKGDWRGISKNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAVLMEDEQVQNQDSLSHPQPVCPAIPETSKSGFPMMPVYQFGVGSGVISVQGGKPLEELTLGQGNIEHKVPINLVRAIPVVADPKAPTVSDIITPSSGSAVDLPTLSLGLSFSSDQRQTSSRHPALHAIPCFSNGDSVISVA* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2021 299 SMART sant 85 135 IPR001005 -
Pvu3g2021 299 CDD SANT 88 133 IPR001005 -
Pvu3g2021 299 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 13 299 - -
Pvu3g2021 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 137 IPR017930 -
Pvu3g2021 299 ProSiteProfiles SANT domain profile. 84 137 IPR017884 -
Pvu3g2021 299 PANTHER KIN2 13 299 - -
Pvu3g2021 299 Pfam Myb-like DNA-binding domain 88 133 IPR001005 -
Pvu3g2021 299 Gene3D - 87 139 - -
Pvu3g2021 299 ProSiteProfiles Myb-like domain profile. 81 133 IPR001005 -
Pvu3g2021 299 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 84 135 IPR006447 GO:0003677
Pvu3g2021 299 SUPERFAMILY Homeodomain-like 83 138 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2021 Pvu-Chr3 40821500 40823556 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu3g2021 Myb_DNA-binding 3.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2021 - - gmx:780536 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2021 3 40821500 40823556 Pvu9g1894 9 27033409 27036857 PCT