Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2016 ATGGGGAAAAATGAGTTTCTCACACCAAAAGCAATTGCCAATCGAATCAAAGCAAAAGGATTGCAGAAGCTTCGGTGGTATTGCCAGATGTGCCAAAAGCAGTGCCGAGATGAGAATGGATTTAAATGCCATTGCATGAGTGAAGGGCACCAGCGTCAAATGCAGATTTTTGGACAAAACCCACACCGGATAGTTGAGGGCTATACTGAAGAGTTTGAGAGCACTTTTCTGGAGCACATGAAGCGCAGCCACCGATTCAGCCGTGTGGCAGCCACTGTAGTTTATAACGAATACATAAATGATAGACACCATGTTCATATGAACTCCACTCAGTGGGCAACACTTACTGAATTTGTCAAGTACTTGGGTCGAACTGGCAAATGTAAGGTGGAGGAAACACCCAAGGGATGGTTCATTACATACATAGACAGAGATTCAGAAACCCTTTTCAAGGAGAGGATGAAGAATAAGAGAATCAAGGCAGATATGGCAGATGAAGAAAAGCAAGAGAAGGAGATCAAGAAACAGATTGAAATGGCTGAACAAATGATACAGCAGCCTACTCCTGAGGCCGATCAGCCTTTACAATCTGAGCCTCCAAGAGAACTAAATATGGAAGATGGAATTAAGATAGGGTTTTCTCTTGGGTCTTCATTGGCTAAACAACCTGTGACCAAGGAAAAGCGTGAGGCATCAAGGGTGGTGTTTGAGGAGGTTGATGAAGAGAGATATGGGGAAAGAAATCCTGGAATCAATTTGAAGAGGAAAGAAAGTGGTGGTGGAAAATCAACTTTGGATGAAATGATGAGGGATGAAGAGAAGAAAAAGGAAAAAATCAACAGGAAGGATTACTGGTTGCATGAAGGAATTGTTGTTAAGGTTATGAGCAAAGTTTTGGCAGAGAAGGGCTACTACAAGCAAAAGGGTGTTGTACGGAAGGTGATTGACAAGTATGTTGGGGAAATAGAAATGCTTGAAAGTAAGCACGTGCTCAGAGTTGATCAGGCAGAGCTTGAAACTGTAATTCCACAAGTTGGGGGCCGTGTAAAAATTGTCAACGGTGCATATAGAGGATCCATTGCTAAGCTGTTGGGGGTGGATACAGATAATTTTTGTGCTAAGGTGCAGATTGAGAAAGGACCTTATGATGGCAGAGTACTTAAAGCTATGGAATACGAGGACATTTGTAAAGTAGCCTAG 1200 0.4258 MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQIFGQNPHRIVEGYTEEFESTFLEHMKRSHRFSRVAATVVYNEYINDRHHVHMNSTQWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKERMKNKRIKADMADEEKQEKEIKKQIEMAEQMIQQPTPEADQPLQSEPPRELNMEDGIKIGFSLGSSLAKQPVTKEKREASRVVFEEVDEERYGERNPGINLKRKESGGGKSTLDEMMRDEEKKKEKINRKDYWLHEGIVVKVMSKVLAEKGYYKQKGVVRKVIDKYVGEIEMLESKHVLRVDQAELETVIPQVGGRVKIVNGAYRGSIAKLLGVDTDNFCAKVQIEKGPYDGRVLKAMEYEDICKVA* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2016 399 Gene3D - 289 342 - -
Pvu3g2016 399 Coils Coil 262 282 - -
Pvu3g2016 399 PANTHER BNAA05G13760D PROTEIN 1 399 - -
Pvu3g2016 399 SUPERFAMILY beta-beta-alpha zinc fingers 26 66 IPR036236 -
Pvu3g2016 399 Coils Coil 154 186 - -
Pvu3g2016 399 MobiDBLite consensus disorder prediction 249 274 - -
Pvu3g2016 399 Gene3D - 343 399 IPR014722 -
Pvu3g2016 399 Pfam KN17 SH3-like C-terminal domain 281 334 IPR041330 -
Pvu3g2016 399 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 399 IPR037321 -
Pvu3g2016 399 Gene3D - 60 160 IPR038254 -
Pvu3g2016 399 SMART Kin17_mid_2 52 178 IPR019447 -
Pvu3g2016 399 CDD KOW_KIN17 345 398 IPR041995 -
Pvu3g2016 399 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2016 Pvu-Chr3 40778633 40781154 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2016 1 399 C2H2 Transcription Factor Family AT1G55460 69.139 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2016 K13102 - gmx:100785931 733.021