Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2015 ATGGTTCAACCAAGTAATGTAACTACCCTATCATCCACCCTGATTTCTTCCTCTGATGACAACACCTTTGATGGTGTTATTGATTCTTCCTCTCATTCAAAACCACCATCATCATCATCAAAGAGGACACGCGGTAGGCCAGCGGGCTCCAAGAACAAACAAAAATTAGCCATTGTGATTGACCAAAACCATGAGCATGTCCAAAAACCTATACTCATTCAAATTCCTATAAACTCTGATGTAATTGAGACTCTAACCCAATTTGTCTGTGATCACCAAATTAGCATCGCAGTGCAAAGTGCATCCGGATCTATTCTAAATGCCACTCTTCGCGATGATCAATCTGAAATTTCTACTTTCATTGTTCATGGACCCTTTACTTTAGCTTCCTTCACTGGCCCTTGCATATATAACAACTATAGTACTACTTCATTATCATCTAATCTTGATTATTTTTTGAACATTTCTTTTTGTTCAAATTTAGATCAAAGCTTTGTTGGGGTTGTTGGAGGGAAGGTTATTGCAGGTGATGATGTTGTTGTGACTGCTACAACTTTCAAGAACTCTTAG 570 0.3825 MVQPSNVTTLSSTLISSSDDNTFDGVIDSSSHSKPPSSSSKRTRGRPAGSKNKQKLAIVIDQNHEHVQKPILIQIPINSDVIETLTQFVCDHQISIAVQSASGSILNATLRDDQSEISTFIVHGPFTLASFTGPCIYNNYSTTSLSSNLDYFLNISFCSNLDQSFVGVVGGKVIAGDDVVVTATTFKNS* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2015 189 CDD DUF296 69 182 IPR005175 -
Pvu3g2015 189 Pfam Plants and Prokaryotes Conserved (PCC) domain 69 188 IPR005175 -
Pvu3g2015 189 Gene3D - 62 187 - -
Pvu3g2015 189 ProSiteProfiles PPC domain profile profile. 65 189 IPR005175 -
Pvu3g2015 189 MobiDBLite consensus disorder prediction 1 53 - -
Pvu3g2015 189 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 188 - -
Pvu3g2015 189 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 8 188 IPR014476 GO:0003680
Pvu3g2015 189 SUPERFAMILY AF0104/ALDC/Ptd012-like 69 187 - -
Pvu3g2015 189 Coils Coil 188 189 - -
Pvu3g2015 189 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2015 Pvu-Chr3 40767474 40768043 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2015 10 188 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 31.492 1.92e-21 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2015 - - var:108336502 235.728