Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2008 ATGGACGACGGCGATCCTTCCCTGTCCGATAAAGAGGAGGAGAACGATGAGGAAGACGTGGCGGGCATTCTGTTGCGAATTCCGATCGTCGATGCTCCCATACTCATCTTCGTTTGCTTCCACAAGGCTTTTCGCTCTGAACTCGATCACCTTCGTCGCTTGGCGGAAACGGCGTCGTTGGAGGACAAGCCTCGCCGTTGCCGGCAAATGATTCTTCAGCTTCAACGCAGGTTCCAGTTTCTGAAACTAGCACATAAGTATCACTGTGCTGCGGAAGACGAGGTTATCTTTCATGCACTGGATGCTCATGTGAAAAATGTCGTTTGTACATATTCGCTTGAACATAAAAGCACCTCAGACCTTTTTGGATCTGTTTTTCACTCCTTGGAAGAGCTGATGGTTCCTAAAGAGAATATTTCGAAGCTGTTCCAAGAACTTGTGTACAGTATTGGTATCTTGCAAACCTACATCTACAAACATATGCTGAAAGAAGAAAAGCAGGTTTTCCCCCTATTGATGCAGAAATTATCTACTGAAGAACAGGCCTCACTTGTGTGGCTATTCATATGTAGTGTTCCTATAATGTTTCTGGAGGAACTTTTTCCATGGATGGTATCCTTCCTTTCTGCAAGTAAGCAGTCAGAAGTTACCCAGTGTATAAATGAAATTGCACCAATGGAAACAGCACTGCAAGAGGTTTTGGTTTCTTGGCTTAGAAGCAACAAACAAACCTTTACTGAGACCAGTTTTCAGAGTGGAGAATTTCAAGGTGTTGATGGTTTCCTGCATATAGAAAGATCATATAGGAAAACCGAAGAAGTTTCAAGTCTAATGGAAGTGAATGGCCAAGAAATAGAAGATGGGGTCAACCAGGTTAATGTCCTTCATCTTTGGCATAATGCCATCCAGAAAGATTTGAAAGAAATTCTGAAAGAACTTTACCTACTAAGAAAATCAGGCTGTTTTCAGAATTTAGACTCAATACTTATCCAAGTGAAATTCTTTGCCGATGTCCTCATCTTCTACAGCAATGCTCTGAAGAAATTCTTTCATCCTGTACTGAGTAAATATGCTAATGTCTGGTTGTCCAAGTCTATTGAAAAATTTCTAGGTGAAAGTAACATTGAAGATATACAACAGTTGCTATTCTATAACTCAGAAAGTGGAACATCTTTGAGCAAGTTCGTAGAGAAGCTTTGCCAAAAACTGGAATCATTTGTATCAGGAGTTAACAAACAATTTGCTTTTCAAGAAAATGAGGTATTTCCTATCTTTAGAAAGAACTGCAGAAATGGAATGCAAGAGGGACTTCTAAGCTTGAGCCTACATATGATGCCTCTGGGGTTACTAAAATGTGTTATAACTTGGTTTTCAGTTAGATTGTCTGAAAAAGAGTCCAGGTCCATTCTCTATTGCATAAAGAAAGGAAACAATTCTGTCTGTAAAGCTTTTTCATCATTATTACATGAGTGGTTCCGCATTGGCTATTCAGGTAAAGCCTCTATTGAAAAATTCAGACTAGACTTGCAACATATGTTCAAAAGAAGATGCTTTATTTCACCTGAAGAAATTAAGGAAGCTCATAGATTTTCTTTCATAAATTCTGAGAAGCAGCCTCATAAAGTCTCTGACCAGAATTCTTTGTCCTGTTCTTCCTCATCTGGATCCAGTAATGTAAACAAGTATGAGATACCATACTCTACAGGAATTAATCTGCACATATTTTTTCCTGCTACAGTTGGGAAGTTACATCAGTATCCTGCATTACATGCAGCAGAACGATCTTCTATTTCCTTTCTTGATGATCCGAAACCAATTGACCTAATATTTTTCTTTCACAAAGCTATCAAGAAAGATTTGGAGTTCCTAGTTCTTGGCTCAGCCGAGCTAGAAAAAAATGATAAGTTGCTTACGGATTTCCAGAAACGATTCCATCTCATATATTTTCTTCATCAGATCCATAGTGATGCAGAGGATGAGATAGTTTTTCCAGCCTTGGAGGCAAGAGGAAAACTAAAAAACATTAGCCATGCTTACACTTTTGATCACAACCATGAAGTTGAACACTTCAATGAAATATCTCACATCCTTGATAAGATGTCTAGATTACATCTTTCAATTTCTACAATTGATTCAAATATAAAGGAGATGGGACTGCTAAGGTATCAGCATTTATGCAGGAAGCTGCAAGAAATGTGCAAATCAATGTATACATCGCTTTCCAATCATATAGACCGTGAGGAAATAGAAATTTGGCCTATAATTAGAAAATTCTTCACAAACCAGGAGCAAGGGAAGATCATGGGATGCATGCTTGGAAGAATAAAGGCAGAAATATTACAAGATATGATACCTTGGCTAATGGCATCTTTGACACAGGATGAACAACATGTTTCAATGTTCTTATGGTCCATGGCTACTAAAAATACAATGTTTGCTGAATGGTTAGGTGAATGGTGGGATGGGTACAGTTTAGCAAAGGTAACAGAGGGCTCAAAAGATGTCCCTCTTCAGCCTGTTGAGCCACTGGAGATTATATCCAAATATTTATCTGAAGAAATTCTAAATGAATTACAAGAATCATCATCTGCCAACAAAAGCATAATTTTTTTGGAGAAGGATCGTATTGGTGATAATGTTGAGCTGTCTAACTACAACCACAATGATAAAGTTAAGGTTCATAATGCAGAAAAAAATAATAATCAATGTTCAAAACGCACAAATCAATTTCTCAATGATGACAAACATGTTTGCAATGAGGTAGCAGATATCAAAAATCCGGTAGCCAATGAAGGTAAGTCGTCTAAACTTTGTGACGAGTCTGGGCGTTATGAACGACTTTTGAAATTGAGCCAAGATGATTTGGAGACGGTGATAAGAAGGGTGTCTCGGGACTCATGCTTAGATCCTCAGAAAAGGTCGTACATAATACAGAACCTACTGATGAGCCGTTGGATTATTAAACAGCAGATCTCTTCTACTGAAGTCAATGTAAAAAATGATAATCTGGAATTTTCTGGAAAGCATCCATCATACAGGGATCCTCTAAAACTAAGCTACGGCTGTAAACACTACAAGAGGAATTGTAAGCTTTTGGCTCCATGTTGCAACCAACTTCATACCTGCATACACTGTCATAACGACGAATCAGATCATTCAATTGATAGAAAATCTATTACAAAGATGATGTGTATGAAGTGCTTGATGATTCAACCAATCAGTGCCACATGCTCAACAGTTTCTTGCAATTTATCGATGGCAAAATATTACTGCAGAATCTGCAAATTATTTGATGATGAAAGGGAAATTTACCATTGTCCTTACTGTAACCTGTGCCGAGTTGGAAAGGGTTTGGGTGTAGACTACTTTCACTGTATGAGTTGCAATGCGTGTATGTCCCGTTCTCTTATGGCGCATACATGCAGGGAGAAACATTTAGAGGACAACTGTCCAATTTGTCATGAATATATCTTCACATCCTGCTCTCCTGTAAAAGCCCTCCCATGTGGTCACGTGATGCACTCAACATGTTTTCAGGAATATACAAGATTTAATTACATCTGCCCCATATGTAGCAAGTCCCTCGGAGACATGCAGGTATATTTTAGGATGTTAGATGCGTTATTGGCTGAAGAGAGTATTTCCGATCAGATGTCATGTCAAACTCAGGTTATATTATGTAATGACTGTGAAAAGAGAGGAGAGACCCCCTTCCACTGGCTCTACCACAAATGCCCTAGCTGTGGTTCCTACAACACTAGAGTTCTGTGA 3771 0.388 MDDGDPSLSDKEEENDEEDVAGILLRIPIVDAPILIFVCFHKAFRSELDHLRRLAETASLEDKPRRCRQMILQLQRRFQFLKLAHKYHCAAEDEVIFHALDAHVKNVVCTYSLEHKSTSDLFGSVFHSLEELMVPKENISKLFQELVYSIGILQTYIYKHMLKEEKQVFPLLMQKLSTEEQASLVWLFICSVPIMFLEELFPWMVSFLSASKQSEVTQCINEIAPMETALQEVLVSWLRSNKQTFTETSFQSGEFQGVDGFLHIERSYRKTEEVSSLMEVNGQEIEDGVNQVNVLHLWHNAIQKDLKEILKELYLLRKSGCFQNLDSILIQVKFFADVLIFYSNALKKFFHPVLSKYANVWLSKSIEKFLGESNIEDIQQLLFYNSESGTSLSKFVEKLCQKLESFVSGVNKQFAFQENEVFPIFRKNCRNGMQEGLLSLSLHMMPLGLLKCVITWFSVRLSEKESRSILYCIKKGNNSVCKAFSSLLHEWFRIGYSGKASIEKFRLDLQHMFKRRCFISPEEIKEAHRFSFINSEKQPHKVSDQNSLSCSSSSGSSNVNKYEIPYSTGINLHIFFPATVGKLHQYPALHAAERSSISFLDDPKPIDLIFFFHKAIKKDLEFLVLGSAELEKNDKLLTDFQKRFHLIYFLHQIHSDAEDEIVFPALEARGKLKNISHAYTFDHNHEVEHFNEISHILDKMSRLHLSISTIDSNIKEMGLLRYQHLCRKLQEMCKSMYTSLSNHIDREEIEIWPIIRKFFTNQEQGKIMGCMLGRIKAEILQDMIPWLMASLTQDEQHVSMFLWSMATKNTMFAEWLGEWWDGYSLAKVTEGSKDVPLQPVEPLEIISKYLSEEILNELQESSSANKSIIFLEKDRIGDNVELSNYNHNDKVKVHNAEKNNNQCSKRTNQFLNDDKHVCNEVADIKNPVANEGKSSKLCDESGRYERLLKLSQDDLETVIRRVSRDSCLDPQKRSYIIQNLLMSRWIIKQQISSTEVNVKNDNLEFSGKHPSYRDPLKLSYGCKHYKRNCKLLAPCCNQLHTCIHCHNDESDHSIDRKSITKMMCMKCLMIQPISATCSTVSCNLSMAKYYCRICKLFDDEREIYHCPYCNLCRVGKGLGVDYFHCMSCNACMSRSLMAHTCREKHLEDNCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTRFNYICPICSKSLGDMQVYFRMLDALLAEESISDQMSCQTQVILCNDCEKRGETPFHWLYHKCPSCGSYNTRVL* 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2008 1256 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 26 1256 - -
Pvu3g2008 1256 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 26 1256 - -
Pvu3g2008 1256 CDD Hr-like 36 170 - -
Pvu3g2008 1256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1143 1194 IPR013083 -
Pvu3g2008 1256 CDD RING-H2_Pirh2 1149 1192 - -
Pvu3g2008 1256 Pfam Hemerythrin HHE cation binding domain 605 754 IPR012312 -
Pvu3g2008 1256 Pfam Hemerythrin HHE cation binding domain 41 172 IPR012312 -
Pvu3g2008 1256 Gene3D - 1221 1256 - -
Pvu3g2008 1256 ProSiteProfiles Zinc finger CHY-type profile. 1015 1084 IPR008913 GO:0008270
Pvu3g2008 1256 ProSiteProfiles Zinc finger RING-type profile. 1150 1192 IPR001841 -
Pvu3g2008 1256 CDD Hr-like 607 753 - -
Pvu3g2008 1256 Gene3D nmb1532 protein domain like 601 773 - -
Pvu3g2008 1256 Gene3D nmb1532 protein domain like 32 189 - -
Pvu3g2008 1256 Pfam Ring finger domain 1148 1191 IPR001841 -
Pvu3g2008 1256 Pfam CHY zinc finger 1022 1096 IPR008913 GO:0008270
Pvu3g2008 1256 SMART ring_2 1150 1191 IPR001841 -
Pvu3g2008 1256 ProSiteProfiles Zinc finger CTCHY-type profile. 1086 1149 IPR017921 -
Pvu3g2008 1256 Pfam Zinc-ribbon 1197 1254 IPR039512 -
Pvu3g2008 1256 SUPERFAMILY RING/U-box 1149 1200 - -
Pvu3g2008 1256 SUPERFAMILY CHY zinc finger-like 1014 1079 IPR037274 GO:0008270
Pvu3g2008 1256 SUPERFAMILY Zinc hairpin stack 1087 1142 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2008 Pvu-Chr3 40691734 40702409 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2008 598 824 C2H2 Transcription Factor Family AT3G18290 25.862 2.05e-16 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2008 K16276 - gmx:100802706 2238.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2008 3 40691734 40702409 Pvu3g2008 3 40691734 40702409 ECH
Pvu2g0859 2 12719788 12723533 Pvu3g2008 3 40691734 40702409 PCT