Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2006 ATGGGACACAAAAAGAGAAACTCAGTGCCGCGCACGAAACCATCTGCGGCGGCTTCTCCGGCGGTGCAATCCGGCGTCGGCGGAGCCGCCAACGGTTCCACCTCGCCGGACGCTGACGCTAGCAATGTTTCCGATCACAAACCACATAACCCTAGCAAGATCGAATTGACTCCGCCCCAATCCGAGGGTTCCGATTACTCCACAATCAAGCTCGAATGCGAGCGCGCCCTGACCACGCTCCGCCGCGGGAACCACAACAAGGCAATGAAGCTGTTGCGGGAGATTTGCTCCAGAGAGGAGGGTTCGCCTCACTCCGCTTTCGTCCACCGAGTTCACAGCCTCATGTGTTTCAAAACGGCGACGGTTATCACCGACCCGAGCTCGAAGCAGCGGCATTTGAAGAACGCGCTAGAGTCGGCGCGCCACGCGGTGGAGCTCATGCCGAATTCCGTTGAGTACGCGCATTTCCGTGCCACGGTGATGTTGGAGGCGGCAAGTGAAGGGAAAGATTACGAGGATGTGGTGCATGAGTGCGAGAGGGGGCTCGCTATCGAGAACCCCAGTGATCCTGCCAAGGAGACGTTGCAGGATGAGAGTGAGCAGAAAGCATCATCTACTGAGGAACGTATTGCGCACGTGCAGAATGAGTTGAGGCAGCTTATTCAGAAGTCGAATATAGCTTCCTTGTCTTCTTGGATGAAGAATTTGAGTAACGGGGAGGAGAGGTTTCGGTTGATTCCGATAAGGAGGACTCCAGAGGACCCCATGGAGGTGAGGCTGGTTCAGACTAGAAGGCCTAATGAGATCAAGAAAGTGACCAAGACGCCCGAGGAAAGACGGAAGGAAATTGAAGTGCGAGTGGCTGCTGCCAGGCTGTTGCAACAGAAGTCAGAGGCACCACAATCTCCGAATGAAGGAGATAGGGATGACAGACCATTGGATTCATCTGCAGGATCTGGTCAGAGGATTGGTGATAGGAGAAGGCATGGAAATGTGAGGAAGAGTGGTTTTACAACGGAAAGGATGAAATGGGTGCACTCCTATTGGAAGTCGGTTAGCGTAGATAGGAAGAAGAACTTTCTGAGGGTTAAAACATGTGATCTTAAGTTGCACTATGGGTCTTCGAAGGATACTTTGCCGAATGATATATTGTCAGAGGCTTTGTCTTATGCTGAGGCCAATAAAACTTGGAAATTCTGGCCTTGCTGCAACTGTGAAGAGAAACATTACAACCCGGATTCTCATAGGCATCATGTTGTGCAGGAGCATATGGGGAGTCTGTCGCCACAAATGCAGAGACTTCTGCCCCAAAATGTGGATAGTGAATGGATTGAGATGATTCTTAATTGTTCATGGAAGCCTCTGGATGTCTTAGCTGCAGTTAGAATGCTTGATAATAAAGCAAGGTTCAAAAGTCCATCACTTTCTGAGGATTTATACTTGGATAATCATACTCTGGACTATAATGTTTGTTTTAAAGAAGCAAGCAGCTCTTACATTGAGAAGGAAAGTTCAGGGGACACTCTTCGTAATTGTTTGGAAGAATGCAATAACCATTGTAAAATTATAGAAAATAATGTAAGAGAAGGTGTTGAAGACCAACTATCTGTGGCTGATCGCATTATTGATTGTTGGCCAGTATCTGATGATCCTGAGCGTGCAAAACTTCTGGGGAAGATTCATGGCATGTTTGAGACTCTTATTAGGCACAAATGTCTTGCTGCTAGTCATCTGAACAAGGTCATACAATTTACTATGGGTGAGATACAGGGTCTCGCTGCTGGTTCTCAACTTCTAAGTCATGGCGTGGACCAAACACCAATGTGCATATGCTTTCTAGGACCTTCACAGCTTAAGACAATCTTCCAATTTCTGCAGGAAATATCTCACGCATGTGGCTTGGCCAGAAATGCTGATAAAGGTAGTAGTCCCACAAATGATTTGCTGAATATCAGTCAAGGTCCCGAGATTAAAGACAAGATTGTACTCGATGGAGATGCATCACGACTCCTACTGGATGAGTGTTTGCTGCAAACACAAGTCACTGCTGGTACAAATCAGGGGTCTGTCTTGGATGATGTGACCACCCCAAGGTCTCCTGATGGAACTTCATGCTATAACGATGCTTTTCTATCCTGGATATTTTCAAGTTCTCCTATTGGGGATCAAGTGACATCATGGCTGCGGATCAGAGAAGATAAAATAAATAAAGGAAAGGAAATTGTCCAGATGCTTGAGAAGGAGTTTTATCACCTACAGGGCCTATGTGAGAAAAAGGGTGAGCGTTTAAGTTATGAGGAAGCGCTGCAAACTGTAGAGGATCTATGTCTTGAAGAAGGTAAGAAGAGGGAAACTGTTGGGGAATTTGTTCAGCGAAGCTATGAATCTGTCTTAAGAAAGCGAAGAGAAGAGCTCATAGAGAGTGAGAATGATATGATGTATGTCAGCAATAGGTTTGAGTTGGATGCTATATCAAATGTTTTGCAAGAAGCAGAAGCAAGGAATGTCAATCAATTTGGTTATGAGGAAACTTATGCTGGTGTAACTTCTCAATTATGTGACTTGGAATCTGGTGAAGAAGATGAATGGAGAATGAAGGACTACTTGCACCAAATGGATGGCTGTATAGAAAATGCTATTCAGAAACTGAAGGAGCATTTATCTATAGAGCTTAGCAAAATTGATGCCCGAATAATTAGAAGTGTCACAGAGATGCAGCAATTGGAATTCAAGCTTGGGCCTATTTCTGCTAATGATTATCGAGCAATATTGGTGCCTCTAGTGAAGTCGTACCTAAGGGCACTTTTGGAAGATTTAGCCGAGAAGGATGCAAGAGAGAAGTCTGATGCTGCAAGTGAAGCATTTTTGGCTGAACTTGCTCTAGATTCCAAGAAGGCTGTTAAAGGTGGAAGTGAGAGCACAAAACATGTCGAGAAAACAAAAGATAGGAAGAAGAATAAAGATCACAGAAAAGCAAGAGATATAAAGGCCACGGGTGATCATGTGCAGTTCTCAGTGGGATCTACTGTTCCCGATTCCAATCTAGTTGCACCTGAAAGTGACTTCCTAGATCATGAAGTTGGTTCTATGAATGATGATGACTTAGAACAACTTGAAGAGGAATTTAGACGGAAAATTGAGCTAGAAGAGGAGGAAAAAAAGCTTGAAGAAACTTTGGAGTTCCAGCGAAGGATAGAAAATGAAGCCAAACAGAGGCATCTTGCAGAGCAACAAAAAAAGTCATCTGGGTTGTACTTAGAAGTGGAAGAAGATCTTCAAGATTGTCAAACAAAGGCCGATACTGATTCACTAGATTCATACAAACAAGACCAGTTGGTACAGGATAATGGATCCCGAAGCAATCTGGATGGTGTTCTAACAACCACAACAAATGGTTCCATTTATTTGCATCAGTCTAAAGTTAAACAATCAGATTTGCCTAATGGAGTTGTTCGAGAGAATGGTCTACCTGTGTCTGATCGGCGTTCTGGAAAAAAACATAAACGGAGAAATTCTTCCAGACCAGTCGATGGAAAGATTGAATCTTTTTCTTCAGAAAAAGATAATGCGGAGGATACACATACTGATTCTCATTTGAGAGAGAAATCCAAATTTAATAACAGTCAGGAGAATAATAATGTGTGGAAAAACAATGGATCAAATGTGATGAGAGAGTTGCCAGTAGAAGATGCAGAGGAGGAAAGATTCCAGGCTGATCTTAAAATTGCTGTGCGCCAAAGCCTGGACACGTTTCAAGCCCGGGGAAGTTTGCCTTCGGCTTCCAGTTTAAGGATGTCCCAGAGGGCTTCTTCAGTGTTAGATGGTGTTGATTGCTCGCCTGTAGAAGACCCAACTGATAATGTGAATGGGGCAACTTTGCTTGGTACTGGACTGAAGAATGAAGTGGGTGAATATAATTGTTTTCTCAATGTTATTATACAGTCATTGTGGCATTTAAGACGCTTTCGAGTGGAATTTCTTGGCAGATCAAGAACAGAGCATGATCATGTGGGCAATCCTTGTGTTGTCTGTGCATTGTACGAAATCTTTACTGCACTGGACATCGCATCTAAGGATTCAAGGAGAGAAGCAGTTGCACCTACATCACTGCGGATTGCTCTAAGTAATCTGTATCCTCACAGTAGTTTCTTCCAGGAGGCCCAGATGAATGATGCTTCTGAGGTACTGGCAGTGATATTTGACTGCCTTCATCGATCATTTACTCGTGGTTCAAGTGTTTCTGATGCAGAATCAGCTGAAACTAACTGCATGGGATCCTGGGATTGTGCAAATAGTAGTTGTATAGCACATTCACTTTTTGGAATGAACATTTTTGAACAAATGAACTGCTATCACTGTGGTCTTGAATCCAGACATATGAAATATACTTCCTTCTTTCACAATATAAATGCCAGTGCCCTCCGTGATATGAAGGAAAAGTCTCCTGCAAGTTTCTTCGATAATCTTTTGAATCTTGTCGAGATGAACCATCAGTTGGCTTGCGATCCAGAAGCTGATGGCTGTGGCAAGTTGAACCACATCCATCACTTTCTCTCAACTCCACCCCATGTTTTTATGACAGTCCTAGGTTGGCAAAATACATGTGAGAGTGCTGATGATATAGCAGCAACTCTGGCTGCCCTGAGCACCACGATCAACATCAGTGTCCTTTATGGTGGTTTAAATCTTGAATGCACCCATAACTTGGTGTCAGTGGTTTGCTACTATGGTCAGCACTACCATTGCTTTGCTTACAGCCATGACCATGAACAATGGATTATGTACGATGACAAGACTGTCAAGGTAATTGGTGGATGGGGGGATGTTCTTACAATGTGTGAAAGAGGGCATCTACAACCTCAGGTTCTTTTCTTTGAAGCTGTAAACTAA 4890 0.4401 MGHKKRNSVPRTKPSAAASPAVQSGVGGAANGSTSPDADASNVSDHKPHNPSKIELTPPQSEGSDYSTIKLECERALTTLRRGNHNKAMKLLREICSREEGSPHSAFVHRVHSLMCFKTATVITDPSSKQRHLKNALESARHAVELMPNSVEYAHFRATVMLEAASEGKDYEDVVHECERGLAIENPSDPAKETLQDESEQKASSTEERIAHVQNELRQLIQKSNIASLSSWMKNLSNGEERFRLIPIRRTPEDPMEVRLVQTRRPNEIKKVTKTPEERRKEIEVRVAAARLLQQKSEAPQSPNEGDRDDRPLDSSAGSGQRIGDRRRHGNVRKSGFTTERMKWVHSYWKSVSVDRKKNFLRVKTCDLKLHYGSSKDTLPNDILSEALSYAEANKTWKFWPCCNCEEKHYNPDSHRHHVVQEHMGSLSPQMQRLLPQNVDSEWIEMILNCSWKPLDVLAAVRMLDNKARFKSPSLSEDLYLDNHTLDYNVCFKEASSSYIEKESSGDTLRNCLEECNNHCKIIENNVREGVEDQLSVADRIIDCWPVSDDPERAKLLGKIHGMFETLIRHKCLAASHLNKVIQFTMGEIQGLAAGSQLLSHGVDQTPMCICFLGPSQLKTIFQFLQEISHACGLARNADKGSSPTNDLLNISQGPEIKDKIVLDGDASRLLLDECLLQTQVTAGTNQGSVLDDVTTPRSPDGTSCYNDAFLSWIFSSSPIGDQVTSWLRIREDKINKGKEIVQMLEKEFYHLQGLCEKKGERLSYEEALQTVEDLCLEEGKKRETVGEFVQRSYESVLRKRREELIESENDMMYVSNRFELDAISNVLQEAEARNVNQFGYEETYAGVTSQLCDLESGEEDEWRMKDYLHQMDGCIENAIQKLKEHLSIELSKIDARIIRSVTEMQQLEFKLGPISANDYRAILVPLVKSYLRALLEDLAEKDAREKSDAASEAFLAELALDSKKAVKGGSESTKHVEKTKDRKKNKDHRKARDIKATGDHVQFSVGSTVPDSNLVAPESDFLDHEVGSMNDDDLEQLEEEFRRKIELEEEEKKLEETLEFQRRIENEAKQRHLAEQQKKSSGLYLEVEEDLQDCQTKADTDSLDSYKQDQLVQDNGSRSNLDGVLTTTTNGSIYLHQSKVKQSDLPNGVVRENGLPVSDRRSGKKHKRRNSSRPVDGKIESFSSEKDNAEDTHTDSHLREKSKFNNSQENNNVWKNNGSNVMRELPVEDAEEERFQADLKIAVRQSLDTFQARGSLPSASSLRMSQRASSVLDGVDCSPVEDPTDNVNGATLLGTGLKNEVGEYNCFLNVIIQSLWHLRRFRVEFLGRSRTEHDHVGNPCVVCALYEIFTALDIASKDSRREAVAPTSLRIALSNLYPHSSFFQEAQMNDASEVLAVIFDCLHRSFTRGSSVSDAESAETNCMGSWDCANSSCIAHSLFGMNIFEQMNCYHCGLESRHMKYTSFFHNINASALRDMKEKSPASFFDNLLNLVEMNHQLACDPEADGCGKLNHIHHFLSTPPHVFMTVLGWQNTCESADDIAATLAALSTTINISVLYGGLNLECTHNLVSVVCYYGQHYHCFAYSHDHEQWIMYDDKTVKVIGGWGDVLTMCERGHLQPQVLFFEAVN* 1630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2006 1629 MobiDBLite consensus disorder prediction 26 41 - -
Pvu3g2006 1629 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1296 1628 IPR028889 -
Pvu3g2006 1629 MobiDBLite consensus disorder prediction 1174 1205 - -
Pvu3g2006 1629 Pfam Protein of unknown function (DUF629) 345 878 IPR006865 -
Pvu3g2006 1629 MobiDBLite consensus disorder prediction 191 208 - -
Pvu3g2006 1629 Pfam Ubiquitin carboxyl-terminal hydrolase 1297 1604 IPR001394 GO:0004843|GO:0016579
Pvu3g2006 1629 MobiDBLite consensus disorder prediction 1206 1220 - -
Pvu3g2006 1629 MobiDBLite consensus disorder prediction 1 65 - -
Pvu3g2006 1629 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 1 1629 - -
Pvu3g2006 1629 SUPERFAMILY Cysteine proteinases 1296 1626 IPR038765 -
Pvu3g2006 1629 MobiDBLite consensus disorder prediction 292 334 - -
Pvu3g2006 1629 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1629 - -
Pvu3g2006 1629 Coils Coil 1031 1072 - -
Pvu3g2006 1629 Pfam Protein of unknown function (DUF627) 75 186 IPR006866 -
Pvu3g2006 1629 MobiDBLite consensus disorder prediction 1145 1221 - -
Pvu3g2006 1629 MobiDBLite consensus disorder prediction 183 208 - -
Pvu3g2006 1629 MobiDBLite consensus disorder prediction 302 334 - -
Pvu3g2006 1629 CDD Peptidase_C19 1387 1626 - -
Pvu3g2006 1629 Gene3D Cysteine proteinases 1286 1627 - -
Pvu3g2006 1629 Coils Coil 196 223 - -
Pvu3g2006 1629 MobiDBLite consensus disorder prediction 967 997 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2006 65 1626 C2H2 Transcription Factor Family AT3G47890 55.151 0.0 1642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2006 - - gmx:100799759 2793.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2006 3 40663904 40673005 Pvu3g2006 3 40663904 40673005 ECH