Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1993 ATGGCGGCTGGAAGGGCCTTTTCCGACATCACTACCTTCCTTCGCAACCAAACCGCTCCTCCCACTTCCCAACCTCTCGATTCTCTCTTCCTCTCTTCTTCCACTGCTTCTTTTCTTGGTTCGAGATCCATGATGAGTTTCGAAGGAGAAGGAGGGAAGGGGTGTAATGGTTCCTTCTTCCGCGCGTTTGACATAGACGAGAATGGAGATGAGTGCATGGACGAGTACTTTCATCAGCCTGAGAAGAAGCGCCGTCTCTCTGCCAACCAGGTTCAGTTCCTCGAGAAGAGCTTCGAGGAAGAGAACAAGCTTGAACCCGAGAGAAAAACCAAGTTAGCCAAAGACCTTGGTCTGCAGCCACGACAGGTCGCTATTTGGTTCCAGAACCGTCGTGCTCGGTGGAGGACCAAACAGCTCGAGAAGGACTACGAGATTCTGCATGACAGCTTTGAGAGTCTCAAGGCCAACTACGAAAGCCTCCTCAAGGAGAAAGACAAGTTGAAATCTGAGGTGGCGCACCTGAGTGAGAAGGTGGTTGCAAGAGAGAAAGAAGAGGGGCAGTTGAAGCAGGGTGAAAGGGGAACGAAGGGGTTGCAGGAACAGGAACAGGAACAGGATGAGGAAGCACCCCAAAGGCCTATACTTGATTCAGTTTCGGAGGGTGAAGGATCGAAAGTTTCTTGCGTTGTTGGGGGTTGCAAACAGGAAGATATCAGTTCAGCCAGGAGTGACATTTTGGACTCCGATAGCCCGCATTACACGGATGGAGTTCACTCAGCAGTGCTAGAGCACGGTGATTCTTCTTATGTGTTTGAGCCTGATCAATCAGACATGTCACAAGATGAAGAAGACAACCTCAGCAAGAGTCTGTACCCTTCCTACCTCTTTCCCAAACTTGAAGATGCCGATTACTCCGACCCCACGGAAAGTTCTTGTAATTTTGGATTCTCGGAGGAAGATCATGCCCTTTGGAACTGGGAGTACTAA 987 0.4995 MAAGRAFSDITTFLRNQTAPPTSQPLDSLFLSSSTASFLGSRSMMSFEGEGGKGCNGSFFRAFDIDENGDECMDEYFHQPEKKRRLSANQVQFLEKSFEEENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWRTKQLEKDYEILHDSFESLKANYESLLKEKDKLKSEVAHLSEKVVAREKEEGQLKQGERGTKGLQEQEQEQDEEAPQRPILDSVSEGEGSKVSCVVGGCKQEDISSARSDILDSDSPHYTDGVHSAVLEHGDSSYVFEPDQSDMSQDEEDNLSKSLYPSYLFPKLEDADYSDPTESSCNFGFSEEDHALWNWEY* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1993 328 SMART HOX_1 80 141 IPR001356 GO:0003677
Pvu3g1993 328 ProSiteProfiles 'Homeobox' domain profile. 77 137 IPR001356 GO:0003677
Pvu3g1993 328 SUPERFAMILY Homeodomain-like 69 139 IPR009057 -
Pvu3g1993 328 Pfam Homeobox associated leucine zipper 137 178 IPR003106 GO:0006355|GO:0043565
Pvu3g1993 328 MobiDBLite consensus disorder prediction 181 223 - -
Pvu3g1993 328 Coils Coil 150 184 - -
Pvu3g1993 328 CDD homeodomain 82 138 IPR001356 GO:0003677
Pvu3g1993 328 PRINTS Lambda-repressor HTH signature 108 117 IPR000047 GO:0003677
Pvu3g1993 328 PRINTS Lambda-repressor HTH signature 117 133 IPR000047 GO:0003677
Pvu3g1993 328 MobiDBLite consensus disorder prediction 181 213 - -
Pvu3g1993 328 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 1 328 - -
Pvu3g1993 328 ProSitePatterns 'Homeobox' domain signature. 112 135 IPR017970 GO:0000981|GO:0006355
Pvu3g1993 328 Gene3D - 76 145 - -
Pvu3g1993 328 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 328 IPR045224 GO:0003700
Pvu3g1993 328 Pfam Homeodomain 82 135 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1993 Pvu-Chr3 40530932 40532793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1993 40 259 Homeobox Transcription Factor Family AT3G01470 42.601 2.56e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu3g1993 Homeodomain 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1993 - - gmx:100799054 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1993 3 40530932 40532793 Pvu9g1964 9 28186663 28188944 ECH
Pvu3g1993 3 40530932 40532793 Pvu3g1993 3 40530932 40532793 ECH