Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1984 ATGCAGGCCCTTTTTTCTCCAGTGTTTATGTTAATATACAAGGAAGGGCTTTGCTCGAGGACCCAGAAGAAGAAACCAGATCAGGAAGGAACAAGGGCTTACGAAGAAAGAAAATTTCCACATATGGAGCTTGCTTCGGAGAGATCTGGTGACGGAGGAAGTGGACTCAAGGAAGAAAACAGAAGTGATGAGTATACTGTTGGTGATGCTGAAGATTCTCCTCATAAACAAGAGATTATTGTCCAGGAAGCACCCGCAGCTAACACAGAAAGATCCAAACAGGAGGCTGGACCTAGCACATCCGCAGACAAAAAGGAAGAGGTTGATGATCAGCTTGAGAGCACGAAAGCTGAAATGGGTGTGGTGAGAGAAGAAAATCAGCGGTTAAAGAGGTCTTTGAACAAAATAATGAGTGAGTATCGGACACTTGAAATGCAATTTCAAGACGTACTTAAGCAAGGGACAAAAAGGAATAAAGGAAATGATAACCAAGAAGACACATTAGAGGAATCGGATCTAGTTTCTCTCAGCCTAGGAAGAGTTCCTAACAATCAAAGAAACGATGAGAAAATAAAAGTTTGTAAAAAATTGAAGGATGATGAAGGGTTTAACGAAGACTTGACTCTTGGACTGTGCAAATCAAAGTCAGGAAGCACAACTGAAGCTTTGCCTAATCCAATCCCAGAAAACAGTTCTGAAGTTCCAAAGGAAGAAGCTGGGGAAACTTGGCCTCCCAGTAAGGAGACACAGAAGACAATTAGGGACACAGAGGATGAAGTTGCTCAGCAAAACCCTATGAAGAAGCCACGAGTTTGCGTTAGAGCAAGATGCGACACTCCAACAATGAATGATGGATGCCAGTGGAGGAAATATGGACAGAAGATCGCAAAGGGAAATCCTTGCCCTCGAGCTTACTATCGTTGCACCATTGCACCATCATGTCCTGTCAGAAAACAGGTGCAAAGATGCGTTGATGACATGTCCATTCTAATTACCACGTATGAAGGGACCCACAACCACACTCTTCCACCTTCAGCTACTGCCATGGCATCCACAACTTCCGCAGCAGCATCCATGCTTCTTTCTGGTTCATCAACCTCTCACTCTGCATCAACACCTTCAACAACAGCAGCCACTTCTGCTACCAATCTCCACGGCCTCAACTTCTATCTTTCAGATGGTTCAAAACCAAGGCAATTATACCTGTCCAACCCTGCACTGTCATCTTCACCTTCCCATCCAACCATCACTCTCGACCTCACTTCACACCCAGCTTCTTCCTCCTCATCACCCTTCGTTAGATTCTCTTCAAACTACAACCAACCCAGATACCCCTCTTCCTCAAGCCTAAGCTTCAGCAGTTCCTCAGAAATCAATGCATTGTCGTGGAGCAACGGCTTCCTTAACAATAATAATACTATTCAACCACCATATAATACCAGGAACATACTTGGGAATGTAAACTTTGGGAGACAACAAGTGGAAAATATATACCAATCCTACATGCAAAAGAACAACAGCAATATTCCAAACGTTCCTCAAGGTGGTGTACCAGCTGATACTATATCTGCAGCAACGAAAGTGATCACAGCAGATCCTACTTTTCAATCAGCTTTGGCTGCAGCGCTCACTTCGTTTATTGGTGGTGGTGTTCGAGGAAATCAAGGTGGTAATAGTGTTGGAGAAAGTCCAAGTTTGGGTCAGAAAATGAAGTGGGGTGAGGTGTTTCCCGCGTCTAATAATTCCTCTTCTACCTTGCCTTGTTCAACTTCGAAAGTCAATGGTTGTGCATCGAGCTTCTTGAACAAAACGCCCGCGAATAATACACAGACGAAAAGTTTGATGTTTCTACCGCCGTCGTCTTTGCCGTTTTCCACCCCCAAAAGTGCATCTGCATCTGCGTCTCCTGCTGATAATAGCGACACCACCAATTAA 1935 0.4424 MQALFSPVFMLIYKEGLCSRTQKKKPDQEGTRAYEERKFPHMELASERSGDGGSGLKEENRSDEYTVGDAEDSPHKQEIIVQEAPAANTERSKQEAGPSTSADKKEEVDDQLESTKAEMGVVREENQRLKRSLNKIMSEYRTLEMQFQDVLKQGTKRNKGNDNQEDTLEESDLVSLSLGRVPNNQRNDEKIKVCKKLKDDEGFNEDLTLGLCKSKSGSTTEALPNPIPENSSEVPKEEAGETWPPSKETQKTIRDTEDEVAQQNPMKKPRVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAPSCPVRKQVQRCVDDMSILITTYEGTHNHTLPPSATAMASTTSAAASMLLSGSSTSHSASTPSTTAATSATNLHGLNFYLSDGSKPRQLYLSNPALSSSPSHPTITLDLTSHPASSSSSPFVRFSSNYNQPRYPSSSSLSFSSSSEINALSWSNGFLNNNNTIQPPYNTRNILGNVNFGRQQVENIYQSYMQKNNSNIPNVPQGGVPADTISAATKVITADPTFQSALAAALTSFIGGGVRGNQGGNSVGESPSLGQKMKWGEVFPASNNSSSTLPCSTSKVNGCASSFLNKTPANNTQTKSLMFLPPSSLPFSTPKSASASASPADNSDTTN* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1984 644 MobiDBLite consensus disorder prediction 52 78 - -
Pvu3g1984 644 SMART WRKY_cls 282 342 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu3g1984 644 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 88 638 IPR044810 GO:0003700
Pvu3g1984 644 MobiDBLite consensus disorder prediction 608 644 - -
Pvu3g1984 644 Pfam WRKY DNA -binding domain 283 340 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu3g1984 644 MobiDBLite consensus disorder prediction 19 114 - -
Pvu3g1984 644 MobiDBLite consensus disorder prediction 19 45 - -
Pvu3g1984 644 MobiDBLite consensus disorder prediction 97 114 - -
Pvu3g1984 644 MobiDBLite consensus disorder prediction 152 171 - -
Pvu3g1984 644 MobiDBLite consensus disorder prediction 214 267 - -
Pvu3g1984 644 ProSiteProfiles WRKY domain profile. 277 343 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu3g1984 644 Coils Coil 105 146 - -
Pvu3g1984 644 MobiDBLite consensus disorder prediction 412 432 - -
Pvu3g1984 644 Gene3D WRKY domain 267 344 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu3g1984 644 MobiDBLite consensus disorder prediction 234 264 - -
Pvu3g1984 644 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 88 638 - -
Pvu3g1984 644 SUPERFAMILY WRKY DNA-binding domain 275 343 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1984 Pvu-Chr3 40445375 40449886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1984 108 552 WRKY Transcription Factor Family AT1G18860 41.800 4.00e-84 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pvu3g1984 WRKY 2.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1984 - - pvu:PHAVU_003G192000g 1189.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1984 3 40445375 40449886 Pvu9g1959 9 28139133 28142787 ECH
Pvu8g0437 8 3709079 3711997 Pvu3g1984 3 40445375 40449886 ECH
Pvu2g0925 2 14907240 14909229 Pvu3g1984 3 40445375 40449886 ECH
Pvu3g1984 3 40445375 40449886 Pvu3g1984 3 40445375 40449886 ECH
Pvu2g0925 2 14907240 14909229 Pvu3g1984 3 40445375 40449886 PCT