Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1980 ATGGCAAATTCTGCTCCCGCGCACTTCTCCACTCAAGCAAACGCGCTTCTTCGCAAGAACTTTACCTTCCAGAAACGGAACGTGAAAACCAACGTTCGGCTGATTCTGTTCCCGGTGGTGCTATGCTTGTTGCTTTTCGTGCTCCAACTCTTATTCGACACGCAATTCGATAAAAGCATCTTCAAATGCGGCTGCGCGTGTGCCGACAACAGAACCGAAATCTCTCGGTGCCCTGACTCAGAGAAGCGGTGCGGGGTCCAGTATTCCAATTCCTTTCAAGCCGCCCTGTGCTCCATTCCCAACCCCGTCGAATGGCCACCGCTCTTGCAACTTCCGGCTCCCCCGAACCGGGCCGTGCGAACCGGTTTTCTTCCCTTTTTCGATTTGCCCGATGTATCGTGCAGGAGAACCGACTCGTGTCCTCTTTCTCTGCTCTTCACCGCAGAGAATCACTCCTTTGCGCAAAGCGTGTCTGAGAAGATGTTTGGGAGTGCCCTGCGTATAAGTGAGTTTGATGGTAATTTATTTGCTGGTTTGGCCGTGAATGTACTGGGATCTGAATCAAAACCTGGGAGGAACAATTTTATTGAACCTGCTTTAACTTCGGATCTCCCCATTTATTATTTACAAACAAACTGCACAGGAACAGAGAATTCTGGACTCTCCTTCCCCTCGACGATAGGAACAAACAATGAGATCACATGTGCTCAGGCTATAAATTTATGGCGTAATAGTTCTTATGAGATCAACAGTGAGCTATACAAAGGTTATCAAAGAGGTAACTCAGAGGGACAAGTCAATGAGATAGTTTCAGCTTTTGATTTTCTAAATTCAAATGGGAATAGATATAATGTCAGTATATGGTACAACTCAACCTACAATCAAGACAGAGGATTTACTGCTAATGCATTGTTGCGGATTCCTCGCTCTGTAAATCTGATTTCCAATTCCTACCTGCAGTTTATGCTTGGACCCGGAGCCAAAATAATTTTTGAGTTTGTAAAGGAAATGCCAAAGCCCGAGACCATCTTTAGGCTTGACATATCTTCTATTGTGGGCACTCTGTTCTTTACATGGGTCATCTTGCAACTTTTTCCTGTTATTTTGACATCACTAGTATATGAGAGGCAACAAAAATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGGCCATATTGGATGATTTCATATGGTTATTTTCTTGTCACATCAATAATCTACATGTTGTGCTTTGTGATATTTGGCTCACTTTTAGGATTAAAATTCTTCACAATCAATGAGTACAGCATCCAATTTGTATTTTATTTTATCTATATAAACTTACAAATTGCGCTAGCATTTTTGGTGGCTTCCATGTTTTCAAATGTCAAGACTGCTACAGTAACTGCGTATATAGGTGTCTTTGGAACCGGGTTATTAGGTGGCTTTCTTTTCCAATTCTTTGTTCAAAATACATCATTTCCAAGAGGGTGGATAATTCTTATGGAGTTGTATCCTGGGTTTGCTTTATACCGTGGGTTATATGAGTTAGCACAATTTTCCCTTCTAGGGCATACATCGGGGACTGGTGGTATGAAGTGGCATAATCTGAGTGAAAGCACTAATGGCATGAAAGAGGTCTTAATTATCATGTTTGCTGAGTGGATGGTGATACTTCTTGCTGCCTTCTACATTGACCAAGTTTTATCGGCAGGAAGTAGAAAAAATCCTCTTTTCTTCTTGAAAGGATTTCAGAAAAAATCTTCTTTCAAAAAGCTTGATACCCAAATGCAGGTGTCAAAAGTATTCTCTCAAATGGAGAAACCTGATGTCATCCAAGAGAAGGAGAAGGTGGAGGAGCTGCTACTTGAACCAACTATTAATCATGCAATTTTAAGTGATGATCTAAAAAAAGTCTATCCCGGGAGGGATGGAAATCCAGATAAATTTGCAGTAAGAGGGTTGTTCCTTTCTGTGCCTCAAGGGGAATGCTTTGGTATGCTTGGTCCCAATGGAGCTGGGAAGACCTCTTTTATCAACATGATGATTGGTCTCACAAAACCAACCTCTGGTACGGCATTTGTTCAAGGCTTGGACATAAGAACTCAAATGGATGGAATATATACTACCATGGGTGTATGCCCACAGCATGACTTGCTGTGGGACAGGTTGACAGGTAGAGAGCACCTCCTTTTTTATGGCAGACTTAAAAATCTTAGAGGCTCAGTCTTAACGCAAGCAGTAGAGGACTCTTTGAAGGGTTTAAACCTTTTTCACGGAGGAGTTGCTGATAAACAAGTTGGAAAGTACAGTGGAGGGATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGGGATCCTAAAGTTGTTTACATGGATGAACCAAGTTCCGGGTTAGACCCTGCCTCAAGAAAAAGCTTATGGAATGTTGTCAAGCATGCAAAACAGAACCGTGCAATCATTCTCACCACACATTCCATGGAAGAGGCAGAGGCCTTGTGTGATCGATTGGGCATATTTGTAAATGGCAGCTTGCAGTGTGTAGGAAATGCGAAGGAGCTTAAAGCAAGATATGGAAGAACATACGTGTTCACAGTGACAACATCGTCGGAGCATGAAAAAGATGTGGAGAACATGGTGCAGAAACTCACCCCAAATGCTAATAAGATATACCATCTCTCTGGTACTCAGAAGTTTGAGCTGCCAAAAGAGGATGTTAGAATATCAGATGTGTTCCAAGCTGTTGATGCTGCAAAGAGAAAGTTCACTGTTTCTGCATGGGGTTTAGTTGACACCACATTGGAAGATGTATTCATTAAGGTAGCACGTGACTCTCAGGCATTTGATACCTTGTCATAA 2847 0.4226 MANSAPAHFSTQANALLRKNFTFQKRNVKTNVRLILFPVVLCLLLFVLQLLFDTQFDKSIFKCGCACADNRTEISRCPDSEKRCGVQYSNSFQAALCSIPNPVEWPPLLQLPAPPNRAVRTGFLPFFDLPDVSCRRTDSCPLSLLFTAENHSFAQSVSEKMFGSALRISEFDGNLFAGLAVNVLGSESKPGRNNFIEPALTSDLPIYYLQTNCTGTENSGLSFPSTIGTNNEITCAQAINLWRNSSYEINSELYKGYQRGNSEGQVNEIVSAFDFLNSNGNRYNVSIWYNSTYNQDRGFTANALLRIPRSVNLISNSYLQFMLGPGAKIIFEFVKEMPKPETIFRLDISSIVGTLFFTWVILQLFPVILTSLVYERQQKLRIMMKMHGLGDGPYWMISYGYFLVTSIIYMLCFVIFGSLLGLKFFTINEYSIQFVFYFIYINLQIALAFLVASMFSNVKTATVTAYIGVFGTGLLGGFLFQFFVQNTSFPRGWIILMELYPGFALYRGLYELAQFSLLGHTSGTGGMKWHNLSESTNGMKEVLIIMFAEWMVILLAAFYIDQVLSAGSRKNPLFFLKGFQKKSSFKKLDTQMQVSKVFSQMEKPDVIQEKEKVEELLLEPTINHAILSDDLKKVYPGRDGNPDKFAVRGLFLSVPQGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAFVQGLDIRTQMDGIYTTMGVCPQHDLLWDRLTGREHLLFYGRLKNLRGSVLTQAVEDSLKGLNLFHGGVADKQVGKYSGGMKRRLSVAISLIGDPKVVYMDEPSSGLDPASRKSLWNVVKHAKQNRAIILTTHSMEEAEALCDRLGIFVNGSLQCVGNAKELKARYGRTYVFTVTTSSEHEKDVENMVQKLTPNANKIYHLSGTQKFELPKEDVRISDVFQAVDAAKRKFTVSAWGLVDTTLEDVFIKVARDSQAFDTLS* 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1980 948 Gene3D - 619 893 IPR027417 -
Pvu3g1980 948 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 8 948 IPR026082 GO:0016021|GO:0055085|GO:0140359
Pvu3g1980 948 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 863 IPR003439 GO:0005524
Pvu3g1980 948 Pfam ABC transporter 651 792 IPR003439 GO:0005524
Pvu3g1980 948 Pfam ABC-2 family transporter protein 243 559 - -
Pvu3g1980 948 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 626 855 IPR027417 -
Pvu3g1980 948 SMART AAA_5 656 840 IPR003593 -
Pvu3g1980 948 CDD ABC_subfamily_A 630 851 - -
Pvu3g1980 948 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 8 948 - -
Pvu3g1980 948 ProSitePatterns ABC transporters family signature. 765 779 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1980 Pvu-Chr3 40400731 40415897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1980 630 874 Calmodulin-binding Proteins AT2G36910 23.922 3.75e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1980 - - vra:106769009 1653.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1980 3 40400731 40415897 Pvu3g1980 3 40400731 40415897 ECH