Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1978 ATGGGAAATTGCTGTGGAACTCGGGTCAAGATTGATGCCAATTTGAATCCCCACCCATATCCTGATGTTACCGAAGTTGACAATAGAAGCACCCATTTGTTAGTTCATTCAAATCCAAACGGGTATGGATACATTGATGAAGGTAAACCTGAGATTCTCCCTACTCCAAGATCTGAAGGGGACATACTTTCATCCCCACATTTAAAGCCCTTCACATTATATGATCTTAAGAAGGCGACAAGAAATTTTCAGGCTCAGAATCTAATTGGAGAAGGAGGATTTGGAAATGTTTATAAGGGGAGGATTAATGGTAGTAAATCCCTCGGGGGTACGATTTCTGGATCTGGAACAGATGTAGCAGTGAAGAAGCTTAGGCCTGAAGGCTTTCAAGGGCACAAGGAGTGGCTGTCCGAAGTCAATTATCTTGGCCAACTTCACCATCAGAATCTTGTCGAACTTATTGGATACTGCCTGGAAGGAGATAACCGACTTCTAGTGTATAAGTACATGCCCAACGGAAGCTTGGAAGATCATATATTTCGCAAGGGCGCACAACCACTTCCCTGGGCAACAAGAATCAAGATTGCTACGGGTGCTGCTCGTGGTCTCTCCTTCCTACATGACTCTAAGCAACAAATTATCTACCGTGATTTCAAGGCTTCTAATATTTTGTTAGATTCGGAATTTAATGCAAAACTCTCAGACTTTGGATTGGCCAAAGCAGGGCCCACTGGTGATCATTCTTATGTTTCCACTCAAGTTCTGGGCACTCACGGCTATGCTGCTCCTGAATATATTGCTACAGGTCGGTTGACAGCAAGGTGTGATGTCTATAGCTTTGGGGTTGTGCTATTGGAACTACTATCAGGGCGCCATGCTATTGATAACACAAAATCTGGAGTGGAACATAATCTGGTAGAATGGGCAAGACCCTATTTGGGTGATAGAAGGAAGTTGTTCCGGATTATGGATACCAAGTTAGAAGGGCAATACCCGCAGAGGGCAGCTTATACAGTTGCAATAATTGCTTTACAATGTATTTGTGATGCCAAGACTAGACCACAAATGTCAGAGATTTTATCTGCCTTGGAACACCTTCCAGCCATTAGACACTCACCAAGCCCATGTAGAGAAGACAAACCCATACAGAGTCCTGTCAGAGAGGCTCTAAGTCCTGCAGTGAATTTCCCTATGAGAAATAATCATCCTCAACAAAATACAGACTTCTGA 1230 0.4341 MGNCCGTRVKIDANLNPHPYPDVTEVDNRSTHLLVHSNPNGYGYIDEGKPEILPTPRSEGDILSSPHLKPFTLYDLKKATRNFQAQNLIGEGGFGNVYKGRINGSKSLGGTISGSGTDVAVKKLRPEGFQGHKEWLSEVNYLGQLHHQNLVELIGYCLEGDNRLLVYKYMPNGSLEDHIFRKGAQPLPWATRIKIATGAARGLSFLHDSKQQIIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGDHSYVSTQVLGTHGYAAPEYIATGRLTARCDVYSFGVVLLELLSGRHAIDNTKSGVEHNLVEWARPYLGDRRKLFRIMDTKLEGQYPQRAAYTVAIIALQCICDAKTRPQMSEILSALEHLPAIRHSPSPCREDKPIQSPVREALSPAVNFPMRNNHPQQNTDF* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1978 409 PANTHER OS01G0588500 PROTEIN-RELATED 29 402 - -
Pvu3g1978 409 Gene3D Phosphorylase Kinase; domain 1 55 169 - -
Pvu3g1978 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Pvu3g1978 409 CDD STKc_IRAK 89 366 - -
Pvu3g1978 409 Pfam Protein tyrosine and serine/threonine kinase 85 362 IPR001245 GO:0004672|GO:0006468
Pvu3g1978 409 ProSitePatterns Protein kinases ATP-binding region signature. 89 122 IPR017441 GO:0005524
Pvu3g1978 409 SUPERFAMILY Protein kinase-like (PK-like) 61 364 IPR011009 -
Pvu3g1978 409 ProSiteProfiles Protein kinase domain profile. 83 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g1978 409 PANTHER BNAC02G17010D PROTEIN 29 402 - -
Pvu3g1978 409 Gene3D Transferase(Phosphotransferase) domain 1 170 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1978 Pvu-Chr3 40380397 40387713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1978 22 366 Glycoside Hydrolase AT3G07070 47.278 9.59e-101 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pvu3g1978 PK_Tyr_Ser-Thr 2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1978 - - pvu:PHAVU_003G191400g 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0919 2 14730389 14733770 Pvu3g1978 3 40380397 40387713 PCT