Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1973 ATGGAGGGAGGCGACGATCTCCACCACCATCACCACCACCACCGTCAAAACTTCCCATTCCAGCTCCTGGAGAAGAAAGAAGACCAAGAACCGCCCTCATGCTCCACCTCCTCCCCTTACCCTTCCCTAGCAATCTCCGCAGAACCCAGCACGTCCAATTCCACCCGATCCAACCAGCTCGCGGTGGTGTCGGAGCCCGCAAACAGCAAAAAGCCGCCGCCAAAACGCACGTCGACTAAGGACCGACACACGAAGGTGGACGGTCGTGGCCGCCGCATCCGAATGCCCGCCCTCTGCGCCGCCCGCGTCTTCCAACTCACGCGCGAACTTGGTCACAAGTCTGATGGCGAAACTATCGAGTGGCTCCTCCAGCAGGCCGAACCCGCCGTCATCGCCGCCACCGGGACCGGTACCATCCCCGCCAACTTCACCTCTCTCAACATCTCCCTCCGCAGCTCCGGCTCCTCCATGTCCGTTCCCTCCCAGCTCCGGTCCTCCTACTTCAACCCCAACTTCTCCCTCCAACAACGGCGCACCTTGTTCCCCGGTATCGCCTTATCGTCCGACACCAACCCCACCAACACCTCCACACTCCTCAATTTCCAATCCAACAACCTGAACAACTCCATGCTCCAGGCGAAGCCCGAAGCCCCCTCCTCCACCTTGGATTTGTCTGACACAAGCGCGGAGGAATCAACCCTAGGCCGAAAAAGAAGACCAACGGAACAAGACATATCTTCGTCCTCGCAGCACCAAATGGGAAGTTATCTCCTCCAGTCGAGTGCGGGCACGATTCCTGCGAGCCACGCCGCCAACATATGGATGGTGGCAAATTCAAACTCCAATCAAGTCATGAGTGGCGATCCCATATGGACCTTCCCTCCGGTTAACAACAGCGCCTTGTATCGAGGCACCATGTCTAGTGGGTTGCATTTCATGAACTTTCCCACGCCCATGGCACTGTTGCCGAGTCAGCAACTAGGGTCTTCTGGGATTGGTGCTGTTGGGGGAAGCAGTAATAATAATAATAACAACAATAATAATATGAATGAAGGGCATTTGAGTATGCTTGCGGGGCTTAGTCCTTATCGTCCTGTTATCGGTGTTTCTGAATCTCAGGCGAGCGGTTCGCAGTCGCATCGTGGAGGTCCTGCCGATGATCGCCATGATACCACCAGTCACCACTCCTAG 1191 0.5634 MEGGDDLHHHHHHHRQNFPFQLLEKKEDQEPPSCSTSSPYPSLAISAEPSTSNSTRSNQLAVVSEPANSKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSLQQRRTLFPGIALSSDTNPTNTSTLLNFQSNNLNNSMLQAKPEAPSSTLDLSDTSAEESTLGRKRRPTEQDISSSSQHQMGSYLLQSSAGTIPASHAANIWMVANSNSNQVMSGDPIWTFPPVNNSALYRGTMSSGLHFMNFPTPMALLPSQQLGSSGIGAVGGSSNNNNNNNNNMNEGHLSMLAGLSPYRPVIGVSESQASGSQSHRGGPADDRHDTTSHHS* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1973 396 MobiDBLite consensus disorder prediction 333 354 - -
Pvu3g1973 396 MobiDBLite consensus disorder prediction 17 31 - -
Pvu3g1973 396 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 10 395 - -
Pvu3g1973 396 MobiDBLite consensus disorder prediction 230 244 - -
Pvu3g1973 396 MobiDBLite consensus disorder prediction 32 65 - -
Pvu3g1973 396 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 10 395 IPR005333 GO:0003700
Pvu3g1973 396 MobiDBLite consensus disorder prediction 382 396 - -
Pvu3g1973 396 MobiDBLite consensus disorder prediction 211 252 - -
Pvu3g1973 396 MobiDBLite consensus disorder prediction 1 88 - -
Pvu3g1973 396 Pfam TCP family transcription factor 77 245 IPR017887 -
Pvu3g1973 396 MobiDBLite consensus disorder prediction 368 396 - -
Pvu3g1973 396 MobiDBLite consensus disorder prediction 211 229 - -
Pvu3g1973 396 ProSiteProfiles TCP domain profile. 79 133 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1973 Pvu-Chr3 40318574 40321385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1973 61 390 TCP Transcription Factor Family AT3G47620 44.262 1.12e-65 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pvu3g1973 TCP 3.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1973 - - pvu:PHAVU_003G190900g 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1973 3 40318574 40321385 Pvu9g1943 9 27886496 27889348 ECH
Pvu3g1973 3 40318574 40321385 Pvu3g1973 3 40318574 40321385 ECH
Pvu2g0894 2 13648787 13650680 Pvu3g1973 3 40318574 40321385 PCT