Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1968 ATGTGTGAAATGGGGAGGTCATCTTGCTGTGACAAAATTGAAATTAAGAAAGGACCTTGGACTCCAGAGGAGGATATCATGTTGGTGTCTTACATTCAAGAACATGGACCAGGAAATTGGAGATCAGTTCCCACCAACTCAGGTTTAATAAGATGCAGTAAGAGCTGCAGGCTTAGATGGACTAATTATCTTCGACCTGGTATCAAACGAGGTAATTTCACCGAGCATGAGGAGAAGATCATAGTCCACCTTCAAGCCCTTTTGGGCAACAGATGGGCTGCTATAGCTTCATACCTTCCAGAAAGAACAGACAACGACATAAAAAATTATTGGAATACCCATTTGAAGAAGAAGCTGAAACTAAGTGATCAAAGTGGGAATGAAGAGGGTGTGGAACAAGAGAGACATTCTTCTTCTTCACATCCAAAGGGTCAGTGGGAGAGAAGATTACAAACAGATATCCAAACGGCCAAGCAAGCCTTGTGTGATGCTTTGTCCCTTCACACCACACCAGCAACACATGCTGTGCCTGAAACCATTCCTTCTTCAACTTCTCATCCACCCTACAGCCAGGCCTCATCTTCATATGCATCAAGCTATGAAAACATTTCCCGGTTGATGGAAAACTGGATGAAAACTCCAAGCTCAAACGAAACAAATTCTCTGGGGGGGTTTTCCTTCAGTAACACGGTGAATAATACACCAAGATGCAGTTCTAGTGAGGGAGCACATAGCACCACTAATACCACGTGTGCACAAGATAATGTTTTTGACTTGTTCACCTTCAGCTCCTCCACAAACTATGGTTCTCCATCTCAGACTCAAGTGCCTCTTACGATGATAGAGAATTGGCTTTTTGAGGATGGGTCTTCTCAGTCTCAGGGAGATCTGATGAGCATGTCACTGGAAGAAAGTACTTTAGGTTTGTTTTAG 933 0.433 MCEMGRSSCCDKIEIKKGPWTPEEDIMLVSYIQEHGPGNWRSVPTNSGLIRCSKSCRLRWTNYLRPGIKRGNFTEHEEKIIVHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLKKKLKLSDQSGNEEGVEQERHSSSSHPKGQWERRLQTDIQTAKQALCDALSLHTTPATHAVPETIPSSTSHPPYSQASSSYASSYENISRLMENWMKTPSSNETNSLGGFSFSNTVNNTPRCSSSEGAHSTTNTTCAQDNVFDLFTFSSSTNYGSPSQTQVPLTMIENWLFEDGSSQSQGDLMSMSLEESTLGLF* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1968 310 Gene3D - 72 147 - -
Pvu3g1968 310 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 296 - -
Pvu3g1968 310 MobiDBLite consensus disorder prediction 121 148 - -
Pvu3g1968 310 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Pvu3g1968 310 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Pvu3g1968 310 CDD SANT 72 115 IPR001005 -
Pvu3g1968 310 CDD SANT 19 64 IPR001005 -
Pvu3g1968 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 68 IPR017930 -
Pvu3g1968 310 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 4 296 - -
Pvu3g1968 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Pvu3g1968 310 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Pvu3g1968 310 MobiDBLite consensus disorder prediction 175 194 - -
Pvu3g1968 310 SMART sant 69 117 IPR001005 -
Pvu3g1968 310 SMART sant 16 66 IPR001005 -
Pvu3g1968 310 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Pvu3g1968 310 Gene3D - 16 69 - -
Pvu3g1968 310 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1968 Pvu-Chr3 40254493 40256012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1968 4 310 MYB Transcription Factor Family AT5G62470 49.454 4.23e-98 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu3g1968 Myb_DNA-binding 7.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1968 K09422 - gmx:100812460 448.358