Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1967 ATGAAAAAGAGACAGGTGGTCGTCAAGAGAGATTACGCCACGTCTTCTGCGGTGGGGAATATTCGATACGGGGAGTGCCAGAAGAATCATGCCGCCAACACGGGAGGCTACGCAGTGGATGGTTGCAGGGAATTCATGGCTAGCGCCGGTGAGGGAACGAGTGCGGCGCTTACGTGTGCGGCTTGCGGCTGCCACAGGAACTTTCACAAGAAGGAAGTACTGCTCGGCGTAAACTGA 237 0.557 MKKRQVVVKRDYATSSAVGNIRYGECQKNHAANTGGYAVDGCREFMASAGEGTSAALTCAACGCHRNFHKKEVLLGVN* 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1967 78 Pfam ZF-HD protein dimerisation region 21 73 IPR006456 -
Pvu3g1967 78 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 4 74 - -
Pvu3g1967 78 PANTHER BNAA09G44460D PROTEIN 4 74 - -
Pvu3g1967 78 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 22 73 IPR006456 -
Pvu3g1967 78 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 23 72 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1967 Pvu-Chr3 40232441 40232677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1967 1 73 Zinc finger-homeobox gene family AT3G28917 61.905 1.06e-30 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pvu3g1967 ZF-HD_dimer 1.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1967 - - gmx:100797273 155.606