Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1963 ATGGAGTCTCATCCTCTTATGGGTTGGAGCTCTTATTATCAAATAGACGAAAAGTCATTTCCATTTACGTGCCAATTTTCTTACAGCGAAATCTCTGGAGTGTATCCTCCACTGCACGATTTAGCCATACAAGAGTACCACCATGATGCTGTTCCTCTTATGGAGTATTACCCTTCAGATCCTTTATATGAAACACTCGCCATCGAACCAACACCAAGCCTGCGAGCAGACTACGATTTCTATGATATTAATAAGGGGCTTTCTGTGTGGAACGAAGTGGATGCTGTGTTTGATACGGAAGTGGGCTTTTTATTTCGTAAGAACGAAGAACGTGGAGGAGGTTTGGAGGAAATGATGGAGAATAAGCAAGGGAGAGAAGAGAGAACGAACTCTAGCAGTAGCAGAATGTTATCAAGGAAGACCATATCTCAGTACTTTTACATGCCAATAACACAAGCTGCCAGAGAACTTAATGTGGGGCTGACACTATTGAAGAAAAGGTGCAGAGAGTTGGGTATAAGAAGGTGGCCCCACAGGAAGCTGATGAGCTTGCAAACTCTGATAAATAATGTACAGGAGCTTCTGAAAGAGGAGGGGCCAGAGAGTGAAGAGAAGTTGAAATATGCCATTGAGACATTGGAAAGTGAAAAGAAGCTTCTGGAGGAAATGCCAGATATTGAACTGGAAGATAACACAAAAAGGCTTAGACAGGCATGTTTCAAGGCCAACTACAAGAAAAGAAAGCTAGGGCAGAGGGAACCACAGTGTTCTTCTTGGAGTGCCTGTGCCTCTCACTTCTCCACTTACATACCTTAA 816 0.4314 MESHPLMGWSSYYQIDEKSFPFTCQFSYSEISGVYPPLHDLAIQEYHHDAVPLMEYYPSDPLYETLAIEPTPSLRADYDFYDINKGLSVWNEVDAVFDTEVGFLFRKNEERGGGLEEMMENKQGREERTNSSSSRMLSRKTISQYFYMPITQAARELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLINNVQELLKEEGPESEEKLKYAIETLESEKKLLEEMPDIELEDNTKRLRQACFKANYKKRKLGQREPQCSSWSACASHFSTYIP* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1963 271 Pfam RWP-RK domain 137 184 IPR003035 -
Pvu3g1963 271 PANTHER PROTEIN RKD1-RELATED 42 258 - -
Pvu3g1963 271 ProSiteProfiles RWP-RK domain profile. 119 204 IPR003035 -
Pvu3g1963 271 MobiDBLite consensus disorder prediction 114 133 - -
Pvu3g1963 271 Coils Coil 203 223 - -
Pvu3g1963 271 MobiDBLite consensus disorder prediction 114 134 - -
Pvu3g1963 271 PANTHER PROTEIN RKD4 42 258 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1963 Pvu-Chr3 40195098 40197035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1963 122 254 AtRKD Transcription Factor Family AT1G18790 68.148 1.47e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pvu3g1963 RWP-RK 4.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1963 - - vun:114175527 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1963 3 40195098 40197035 Pvu3g1963 3 40195098 40197035 ECH
Pvu3g1963 3 40195098 40197035 Pvu9g1931 9 27654946 27655983 PCT