Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1956 GATGCTGGAGTTGACAATGTTACCGAGGAAGAGCTAGAAGCTGATTCTGCTCCAAGTGCAGGAGAGACTAAAGATTCAGGTACCCCTGAGGCTATTGTGAACCCCGAAACACCCTCCATAGAAGAAGAAACTGCAAAATCAAAAGCTGACAAATCAGAGAAGGAGCAAGGCGATGCAGCCAACTCACAAGAGAAAACTCTGAAGAAACCAGATAAAGTGCTACCATGCCCCCGCTGCAAAAGTATGGACACTAAGTTTTGTTACTACAACAACTACAATGTCAACCAGCCACGTTATTTCTGCAAAGCTTGTCAAAGATACTGGACTGCAGGTGGCACCATGAGGAATGTTCCTGTGGGGGCAGGGCGGCGAAAGAACAAGAACTCTACCTCGCATTATCGCCACATCAGTATCTCTGAGGCCCTTCAAGCAGCCAGAATTGATTCTCATAATGGAACTCATCTTCCAACTTTGAAAGGCAATGGTAGAGTTCTCAGCTTTGGATTAGATGCAAATGCACCAATTTGTGATTCCATGGCATCCGTCCTCAATCTTGGAGAGAAAAAGGTTCCTAATGGCACAAAAAATGGGTTTCCTCATGGCTTTGAGGATCAAGGACTCCCTATTCCTCGCAAAAGTGGGGAAAATGGTGATGACTCCTCGACTACATCTTCCATTACAGTTTCAAATTCCATGGGAGAAAGTAGCAAAAACACCTTCCAACAACAACCGGTGCTCCAACCTCATGGTTTCATTCCTCAACTTCCGTGTGTGCCTTGGCCCTTTACATGGAATTCTCCCGTTCCCCCACCTGCTTTGTGTCCTTCCGGATTTCCCTTACCATTCTATCCTCCTGCTACATTCTGGAACTGTGGTATGCCAGGGAATTGGAATGTTCCATGGTTTTCTTCACTTTCATCTGCTTCAAACCCAAACTCTCCAAGCTCCGCTCCAAACTCTCCGACTTTGGGGAAGCACTCGCGGGACGGAGACATGATTAAGCAGGACTCTTTGCACAAAGAAGAAGCTTCAAAGCCACGAAACGGGGGTGTTTTGGTTCCCAAAACCTTGAGAATTGATGATCCAAATGAAGCTGCAAAGAGTTCTATATGGGCAACTCTAGGAATTAAGAATGAGTCATTGAGTGGGGGAGGTATGTTTAAGGCGGCCTTCCAATCAAAGAAGGACGAAAAGAGTCGTGTTGAAGCCTCTCCAGTGTTGATGGCCAACCCTGCAGCTTTATCTAGATCCCTCAATTTTCATGAGAACTCATGA 1275 0.4604 DAGVDNVTEEELEADSAPSAGETKDSGTPEAIVNPETPSIEEETAKSKADKSEKEQGDAANSQEKTLKKPDKVLPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSTSHYRHISISEALQAARIDSHNGTHLPTLKGNGRVLSFGLDANAPICDSMASVLNLGEKKVPNGTKNGFPHGFEDQGLPIPRKSGENGDDSSTTSSITVSNSMGESSKNTFQQQPVLQPHGFIPQLPCVPWPFTWNSPVPPPALCPSGFPLPFYPPATFWNCGMPGNWNVPWFSSLSSASNPNSPSSAPNSPTLGKHSRDGDMIKQDSLHKEEASKPRNGGVLVPKTLRIDDPNEAAKSSIWATLGIKNESLSGGGMFKAAFQSKKDEKSRVEASPVLMANPAALSRSLNFHENS* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1956 424 MobiDBLite consensus disorder prediction 215 242 - -
Pvu3g1956 424 MobiDBLite consensus disorder prediction 307 323 - -
Pvu3g1956 424 MobiDBLite consensus disorder prediction 1 74 - -
Pvu3g1956 424 ProSiteProfiles Zinc finger Dof-type profile. 74 128 IPR003851 GO:0003677|GO:0006355
Pvu3g1956 424 MobiDBLite consensus disorder prediction 1 16 - -
Pvu3g1956 424 PANTHER CYCLIC DOF FACTOR 2 13 423 IPR045174 GO:0003700|GO:0006355
Pvu3g1956 424 MobiDBLite consensus disorder prediction 194 242 - -
Pvu3g1956 424 Pfam Dof domain, zinc finger 71 128 IPR003851 GO:0003677|GO:0006355
Pvu3g1956 424 MobiDBLite consensus disorder prediction 307 330 - -
Pvu3g1956 424 MobiDBLite consensus disorder prediction 41 74 - -
Pvu3g1956 424 ProSitePatterns Zinc finger Dof-type signature. 76 112 IPR003851 GO:0003677|GO:0006355
Pvu3g1956 424 PANTHER CYCLIC DOF FACTOR 1 13 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1956 Pvu-Chr3 40146058 40147729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1956 35 422 C2C2-Dof Transcription Factor Family AT3G47500 52.580 4.75e-115 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pvu3g1956 zf-Dof 2.6e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1956 3 40146058 40147729 Pvu9g1928 9 27607268 27610475 ECH
Pvu3g1956 3 40146058 40147729 Pvu3g1956 3 40146058 40147729 ECH
Pvu2g1755 2 31594717 31597909 Pvu3g1956 3 40146058 40147729 ECH
Pvu2g0868 2 13002774 13006753 Pvu3g1956 3 40146058 40147729 PCT