Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1954 TTGGGATGTGCATGGAGAGGAAGACGTGGCAAACATAAAGGTCGAAGAGAAAGAGGAAAATGTGTTGGTTTTGTTGGTAGAGGAGGTGTTTGTTGCATAGGGTGCCAACGATTGGGGTCTCCCAAATCTCACCCTTCATATTCATGTTATGAGCTTGGTTGGTTTCCCAAACTCAACCCACCGAAATCACAGCTACACCTTTCATCTTCCAACAATTTGTTAGCTCTTAGATATCATATCCAGCTTTCCTTCTTTCTCTCTACTCGCCATCTCCCCATAAACAAATGTTGCTGTGATTCTTCAGTTACCTCACACCTTCACCCCTTTTATTTTAACATTTCCATTCACTTCCCTCGATTCTTTTCCTCTGTCTTCACTCTCTCAATAAGGATGGGAAGGGTTAAATTGAAGATAAAGAAACTAGAGAGCATAAGCAATCGACATGTGACTTATTCAAAGCGTAAAAGTGGAATTTTAAAGAAAGCAAAGGAATTATCAATACTATGCGATATAGACATTCTCCTTCTCATGTTTTCTCCTACAGGAAAGCCTACATTACTACAAGGAGAGCGCAGTAATATTGAGGAGGTTGTTGCAAAATTTGGTCAACTTAGCCCACAAGAAAGGGCCAAAAGGAAAATGGAAAGCCTTGAAGCACTAAAGAAAACCTTCAAGAAATTGGATCATGACGTAAAAATACAGGATTTCTTAGGTTCAAGCAGCCAAACAATGGAGGAATTATCTCATCAAGTGAGGGTTTTACAAGCTCAACTCACAGAAGTACATCAGAGACTGAGCTATTGGAATAATCTAGAGAAGATCAACAATTTAGAGCATCTTAGGCAAATGGAAGACTCGTTACGAGAATCAATCAATCGAGTGGTTCTGCAGAAGGAAAATTTAGGAAAGCACCAATTCATTTCACTTGAATGTGCTAACCAGTTACAGGAAGGGATGACATTACCCTTGATGATGGCAAGTCTACAAGAATCTCAACCACTGTCTTGGCTTTTGAATAATGATAATCATCAATTGTTGTTACCAAATGAACCAAAATTTCTACCATTTAGTGATAATACCAATAGAGACGCTGAGTGTTCAACTGACATTTCAATTCCAAGCTATTCAAGTTATATTGGGAGCCACAAACTTGAAGTTGGTAGTTCTCCCCAAGTGACTACTTTGGGTCAAGGAGGTGGTGCAATGAACGAGTTAAATGGAACAACATACTTAAATGTACAACGTTGTGACCAATTTACATTCCCTCCTCCACAAGATATTGAGGAAGCAAAACATTTACCAACGTTGAACAACAAATCAAACACCGTGGATTACCAAGTTAACAACTTTGATCTTTCCGGTTCACTATTCGAAAATGGACATCAATTTTGGAATTCAGCTTCGGGGTCTTGTGGTATTGCCATGTATAATGAGAACGGCTACCACAGGTAA 1452 0.3919 LGCAWRGRRGKHKGRRERGKCVGFVGRGGVCCIGCQRLGSPKSHPSYSCYELGWFPKLNPPKSQLHLSSSNNLLALRYHIQLSFFLSTRHLPINKCCCDSSVTSHLHPFYFNISIHFPRFFSSVFTLSIRMGRVKLKIKKLESISNRHVTYSKRKSGILKKAKELSILCDIDILLLMFSPTGKPTLLQGERSNIEEVVAKFGQLSPQERAKRKMESLEALKKTFKKLDHDVKIQDFLGSSSQTMEELSHQVRVLQAQLTEVHQRLSYWNNLEKINNLEHLRQMEDSLRESINRVVLQKENLGKHQFISLECANQLQEGMTLPLMMASLQESQPLSWLLNNDNHQLLLPNEPKFLPFSDNTNRDAECSTDISIPSYSSYIGSHKLEVGSSPQVTTLGQGGGAMNELNGTTYLNVQRCDQFTFPPPQDIEEAKHLPTLNNKSNTVDYQVNNFDLSGSLFENGHQFWNSASGSCGIAMYNENGYHR* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1954 483 Coils Coil 244 264 - -
Pvu3g1954 483 CDD MADS_SRF_like 132 214 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pvu3g1954 483 ProSiteProfiles MADS-box domain profile. 131 183 IPR002100 GO:0003677|GO:0046983
Pvu3g1954 483 Gene3D - 144 226 IPR036879 GO:0003677|GO:0046983
Pvu3g1954 483 PANTHER SERUM RESPONSE FACTOR HOMOLOG 131 482 - -
Pvu3g1954 483 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 131 482 - -
Pvu3g1954 483 SMART madsneu2 131 190 IPR002100 GO:0003677|GO:0046983
Pvu3g1954 483 Coils Coil 207 227 - -
Pvu3g1954 483 PRINTS MADS domain signature 133 153 IPR002100 GO:0003677|GO:0046983
Pvu3g1954 483 PRINTS MADS domain signature 153 168 IPR002100 GO:0003677|GO:0046983
Pvu3g1954 483 PRINTS MADS domain signature 168 189 IPR002100 GO:0003677|GO:0046983
Pvu3g1954 483 SUPERFAMILY SRF-like 132 225 IPR036879 GO:0003677|GO:0046983
Pvu3g1954 483 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 141 185 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1954 Pvu-Chr3 40133667 40138640 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1954 131 420 Type I MADS-box Gene Family AT2G03060 49.333 3.13e-85 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu3g1954 SRF-TF 3.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1954 - - pvu:PHAVU_003G189100g 941.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1954 3 40133667 40138640 Pvu3g1954 3 40133667 40138640 ECH