Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1953 ATGGAAAAGCTTTCGCTGCTTTCTAAGGAAGACCATCACATGGATTTGCCTCCGGGATTTCGCTTCCACCCCACTGATGAAGAGCTTATAACCCATTACCTCTACAAGAAGGTCATTGACACCAACTTCTGCGCTAGGGCCATTGGAGAAGTCGACCTCAACAAGTCTGAGCCTTGGGATTTGCCATGGAAAGCCAAAATGGGAGAGAAGGAGTGGTACTTTTTCTGTGTCAGAGACAGAAAATACCCCACTGGCTTGAGAACCAACAGGGCCACTGAAGCCGGTTACTGGAAAGCCACGGGGAAAGACAAAGAGATTTTCAGAGGAAAATCTTTGGTCGGAATGAAAAAGACTCTCGTTTTCTACCGAGGTCGAGCACCCAAAGGAGAGAAAAGCAACTGGGTCATGCACGAGTACAGACTCGAGGGGAAATTCTCTGTTCACAACCTCCCCAAAACTGCAAAGAACGAGTGGGTGATCTGCAGGGTGTTTCAGAAAAGTTCTGCGGGGAAGAAAACTCATATTTCGGGGATAATGAGGTTGGACTCTTTTGCCAATGAATTGGGTTCATCTGCTCTGCCACCCCTTTCGGATTCTTCACCTTCTATTGGCAACACTAAACCGCTGAATGAATCGGCTTACGTGCCCTGCTTCTCCAATCCAATTGATGTTCAAAGAAACCAAGAAGGGGTCTTTGATTCCCTCAACAACTCTATTTATGGGGTTTCTTCAAATCCCTTGGACTTTCTTCCCAGAATGCCACCTTCTGCCTCGTTCTACTCCACTCAAGCTGTTCAAGCTGTGCCTAATTTGACATTTCCCGGTTCTGTTTACACTCTGCAGGACCACACCATTCTGAGAGCCATGTGTGAAAACAATGGTAATGATTACAAGTCAGAGAGGGACATGATCAGTGTTTCACAGGAAACGGGTCTTACTACTGATATCAACCCTGAAACCTCTTCAAATTTTGATATGGGTAGGAGGCACTTTGACAATCACAATCATCCATCTGTTTCTGTTTCTGTTTCTGTTGCTCCATTGGATCTTGATGGTTTGTGGAATTACTAA 1071 0.4556 MEKLSLLSKEDHHMDLPPGFRFHPTDEELITHYLYKKVIDTNFCARAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFRGKSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFSVHNLPKTAKNEWVICRVFQKSSAGKKTHISGIMRLDSFANELGSSALPPLSDSSPSIGNTKPLNESAYVPCFSNPIDVQRNQEGVFDSLNNSIYGVSSNPLDFLPRMPPSASFYSTQAVQAVPNLTFPGSVYTLQDHTILRAMCENNGNDYKSERDMISVSQETGLTTDINPETSSNFDMGRRHFDNHNHPSVSVSVSVAPLDLDGLWNY* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1953 356 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 352 - -
Pvu3g1953 356 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 7 352 - -
Pvu3g1953 356 SUPERFAMILY NAC domain 13 166 IPR036093 GO:0003677|GO:0006355
Pvu3g1953 356 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Pvu3g1953 356 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Pvu3g1953 356 Gene3D NAC domain 25 170 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1953 Pvu-Chr3 40106784 40108540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1953 14 356 NAC Transcription Factor Family AT5G07680 58.892 7.85e-137 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu3g1953 NAM 2.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1953 - - gmx:100798002 647.506