Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1912 ATGGCGTCTTCTTCATCTTTGGCAAAGCGATGCCATTACGAAGTGCTCGATCTCTCCCAAGACTGCGCCCCAGAAGAGATCCGCTCCGCCTACCGCCGTCTCGCTCTTCAGCGCCACCCGGACAAGCTCGTAAAATCGGGTCTCTCCCAAGAAGAAGCCACCGCGCAGTTTCAAGAACTCCAACACGCATACGAAGTTCTATCCGACCCCAAGGAACGCGCTTGGTACGATTCTCACCGTTCCCAAATCCTCTTTTCCGACCCCAATTCCCTCTCCAAATCACTCGTCCCCGACCTCTTCTCCTTTTTCTCAAACACCGTCTATTCCGGCTACTCCGACACCGGAAAGGGCTTCTATAAAGTTTATTCTGATGTTTTCGATAAAATCCTTGCTAACGAGATCAATTTCGCTCGGAAAATGGGGCTCGGAGTTGATGCGGTTCGACAGGCTCCTGTAATGGGGAACCTGGATAGCCCCTACGCGCAGGTCACTGCGTTTTATGGATATTGGTTAGGGTTTTGTACTGTGATGGATTTTTGTTGGGTGGATGAGTATGATGTTATGGCAGGGCCGAACCGGAAGTCGAGGCGGCTTATGGAGGAGGAGAATAATAAGGTGAGGAGGAAGGCGAGAAGAGAGTATAATGATACTGTGAGGAGGTTGGGGGATTTTGTGAAGAAGAGGGATAAGAGGGTAATTGACATGAAGGTGAAGAGGAGTGCGGAGATGGAGAGGAAGAAGGAGGAGGAGAGGGAGAGGAAGAAAAGGTTGGAGCAGGAGAGGAAGGAGAGGGCCATGGCGTATGAGGAACCTGATTGGGCTAAGGTGGAGGTGGAGGAGGTAGTGGAGGAATGGGTTGAAGAGGGGGATGAGGAGAAGAAGAATGATAAGGAGTTTTATTGTGTGCTCTGTGGGAAGAAGTTTAAGAGTGAGAAGCAGTGGAAGAACCATGAGCAGTCCAAGAAGCATAAGGAGAGGGTTGCGGAGTTCAGGGATTCCATTGGTGATGAGGAGGATTTAGAAGAAGGAAAGGAGGGATTGGGAAGTGAGGAAGATGGGGTTGGGGTGAATGGTGATGGTGGTAATGGGGTTGGAGTGAATGGTGTTGGTGATTTGGAGACGAGGATTCGGGATGGTCTTAATGTTGAAGAGGGGGTAATTAGAAACGGGGTTGAGCTGGATGATGAAGATGGCGGCGGCGGTGATGGTGATGATGATGATGATGACGACGAGTTTTCTGAAGCTTCGCATGTGAAAGAGGGGGAAGATGCCAATGGGTCGGTCAATCTTGACGATAATGGCAATCAAGATGATGATAACGATGAAAATGGTGTTCTTGAAGCAATGGTGGCTGGCCACAAGAACAGAAAGCCACGAGCTTCAACGCACAAATCCAAAGCTTCAATAGTTCCATCTCAAATTGAAACTGAGAATGATGAAGTTGGCCCTATGGAATATAACAACCGGAAGAGCACAAAAAAGAAACGTGGAGCTAAGAAAGAGAGGGGTAGGAAAAATTGGGAAGAATCTCAGGAGCCTGCTGCCAGTTGCAATGATGAGAATATAAACGGTAATGGAAATGACAATTCTCATGCAGAGGAGTCTTGTTCCCAACATTTTGTGGAAAATGAGGATAATAGTATGGGTAACGAGCAGCAGGTTAGTAGAGGTAATAAGATTTCAAACCAATCCGCTGATAAAAAGGGTGCTGGCAAGGACACAAAAATCAAAGCCAAAATTTCATCCAAAGGAAGAAAAGCAAAGGTGACATCAAAAAACATTGGTAATACTTGTGATGCGTGTGGAGAGGAGTTTGAATCAAGAAATAAATTACATAGACATCTAGGCGATTCTGGGCATGCGACAATACTAAGAGGTCGATAA 1884 0.4719 MASSSSLAKRCHYEVLDLSQDCAPEEIRSAYRRLALQRHPDKLVKSGLSQEEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSLSKSLVPDLFSFFSNTVYSGYSDTGKGFYKVYSDVFDKILANEINFARKMGLGVDAVRQAPVMGNLDSPYAQVTAFYGYWLGFCTVMDFCWVDEYDVMAGPNRKSRRLMEEENNKVRRKARREYNDTVRRLGDFVKKRDKRVIDMKVKRSAEMERKKEEERERKKRLEQERKERAMAYEEPDWAKVEVEEVVEEWVEEGDEEKKNDKEFYCVLCGKKFKSEKQWKNHEQSKKHKERVAEFRDSIGDEEDLEEGKEGLGSEEDGVGVNGDGGNGVGVNGVGDLETRIRDGLNVEEGVIRNGVELDDEDGGGGDGDDDDDDDEFSEASHVKEGEDANGSVNLDDNGNQDDDNDENGVLEAMVAGHKNRKPRASTHKSKASIVPSQIETENDEVGPMEYNNRKSTKKKRGAKKERGRKNWEESQEPAASCNDENINGNGNDNSHAEESCSQHFVENEDNSMGNEQQVSRGNKISNQSADKKGAGKDTKIKAKISSKGRKAKVTSKNIGNTCDACGEEFESRNKLHRHLGDSGHATILRGR* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1912 627 SUPERFAMILY Chaperone J-domain 8 81 IPR036869 -
Pvu3g1912 627 ProSiteProfiles Zinc finger C2H2 type domain profile. 596 621 IPR013087 -
Pvu3g1912 627 ProSitePatterns Nt-dnaJ domain signature. 57 76 IPR018253 -
Pvu3g1912 627 Gene3D Classic Zinc Finger 287 349 - -
Pvu3g1912 627 ProSitePatterns Zinc finger C2H2 type domain signature. 598 620 IPR013087 -
Pvu3g1912 627 SUPERFAMILY beta-beta-alpha zinc fingers 288 339 IPR036236 -
Pvu3g1912 627 MobiDBLite consensus disorder prediction 541 565 - -
Pvu3g1912 627 MobiDBLite consensus disorder prediction 566 580 - -
Pvu3g1912 627 Pfam Zinc-finger double-stranded RNA-binding 299 324 IPR022755 -
Pvu3g1912 627 SMART c2h2final6 596 620 IPR013087 -
Pvu3g1912 627 SMART c2h2final6 299 323 IPR013087 -
Pvu3g1912 627 SMART dnaj_3 10 72 IPR001623 -
Pvu3g1912 627 MobiDBLite consensus disorder prediction 376 395 - -
Pvu3g1912 627 Gene3D DnaJ domain 2 92 IPR036869 -
Pvu3g1912 627 ProSiteProfiles Zinc finger C2H2 type domain profile. 299 328 IPR013087 -
Pvu3g1912 627 MobiDBLite consensus disorder prediction 311 589 - -
Pvu3g1912 627 MobiDBLite consensus disorder prediction 311 333 - -
Pvu3g1912 627 MobiDBLite consensus disorder prediction 396 413 - -
Pvu3g1912 627 Coils Coil 233 267 - -
Pvu3g1912 627 ProSiteProfiles dnaJ domain profile. 11 80 IPR001623 -
Pvu3g1912 627 SMART ZnF_U1_5 296 330 IPR003604 GO:0003676|GO:0008270
Pvu3g1912 627 PRINTS DnaJ domain signature 13 31 IPR001623 -
Pvu3g1912 627 PRINTS DnaJ domain signature 31 46 IPR001623 -
Pvu3g1912 627 PRINTS DnaJ domain signature 52 72 IPR001623 -
Pvu3g1912 627 Pfam DnaJ domain 12 77 IPR001623 -
Pvu3g1912 627 ProSitePatterns Zinc finger C2H2 type domain signature. 301 323 IPR013087 -
Pvu3g1912 627 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 7 623 IPR044648 -
Pvu3g1912 627 MobiDBLite consensus disorder prediction 511 534 - -
Pvu3g1912 627 CDD DnaJ 11 69 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1912 Pvu-Chr3 39684480 39688081 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1912 1 623 C2H2 Transcription Factor Family AT1G74250 50.980 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu3g1912 DnaJ 1.2e-20 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1912 K09506 - gmx:100788305 890.952