Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1908 ATGGCTTTCTTTGGTAGAATTGGGAATTTGTTAAGACAGACAGCTAGCAGACAGGTTAGTTCAGAGCTGCGTTCGTCTCCTTCCTTTTTCCAGGCTATACGCTGTCTGTCTTCTGCTCCAAGCTCCAAGCTGTTTATTGGAGGTGTTTCGTTTTCCACTGATGAACAAAGCTTGAGGGAAGCTTTTTCAAAATATGGTGAAGTTGTTGATGCAAGGATAATTATGGATCGTGAAACTGGAAGATCCAGGGGGTTTGGATTTGTTACATACACGTCTGTTGAGGAGGCATCGAGTGCCATTCAGGCCTTGGATGGTCAGGACCTTCATGGTCGCTCTATTAGGGTAAATTATGCTAATGAAAGAACTCGTGGATTTGGCGGTGGTGGTTCATATGGTGCTGGAGGTGGCGGTGGCTATGGAGGTGCATATGGTGGTGGTGGCTACGGTGGTGGTGGTGGCTATGGTGGAAATTCTGGTGGTGGTTATGGTGGAAATTCTGGTGGTGGTTATGGTGGTGGTAGCTATGGTGGGAATGCTGGTGGTGGTTATGGTGGTGGTGGTGGCGGCTACGGTGCAGGTGGCTATGGATCAGGTGGCAATTCGGGGGACAGTGGCTCTGGCAATAACTATCCTGCTGCTGACAGTTTTGGAGCTGGTGGTGGTGGTGGCAGCTACAGTGGTAATTTTGGTGATGCTGGTGGAGTAGGCAATCATGAAAGCTCTACTGGTTTTGGCAGTGCTGTTGATGGTAGTGCTGCAGGTATTGGCACCAGCTTTGGTGGGGGAAGTGGAGGGTTAGGCAGTGGTCAATTTGATGGCAAAGCAAGCAGCAACGGAGATGAGGATTACAGGGATGACAATGACGATGCTGATAATTTTGCCAAAAGGGCTTGA 894 0.4922 MAFFGRIGNLLRQTASRQVSSELRSSPSFFQAIRCLSSAPSSKLFIGGVSFSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFVTYTSVEEASSAIQALDGQDLHGRSIRVNYANERTRGFGGGGSYGAGGGGGYGGAYGGGGYGGGGGYGGNSGGGYGGNSGGGYGGGSYGGNAGGGYGGGGGGYGAGGYGSGGNSGDSGSGNNYPAADSFGAGGGGGSYSGNFGDAGGVGNHESSTGFGSAVDGSAAGIGTSFGGGSGGLGSGQFDGKASSNGDEDYRDDNDDADNFAKRA* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1908 297 CDD RRM_HP0827_like 43 119 - -
Pvu3g1908 297 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 166 - -
Pvu3g1908 297 MobiDBLite consensus disorder prediction 230 249 - -
Pvu3g1908 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Pvu3g1908 297 Gene3D - 12 140 IPR012677 -
Pvu3g1908 297 MobiDBLite consensus disorder prediction 263 297 - -
Pvu3g1908 297 SUPERFAMILY RNA-binding domain, RBD 39 152 IPR035979 GO:0003676
Pvu3g1908 297 SMART rrm1_1 43 116 IPR000504 GO:0003723
Pvu3g1908 297 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 166 - -
Pvu3g1908 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1908 Pvu-Chr3 39647927 39651235 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1908 42 172 Eukaryotic Initiation Factors Gene Family AT3G16380 29.371 2.41e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1908 K12741 - gmx:100799124 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1908 3 39647927 39651235 Pvu3g1908 3 39647927 39651235 ECH