Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1898 ATGAGTGGCATGATGAATGAAAGTTCAAGTAAAGTTCAGTTAGCCAATCAACAAGAGGGTGAGAACATTAAAACTGAGAAATTCTCAAAGGCACCCTCCACCTCAAGATCATGGTCAACATTCAGAAACCCAAGAATTGTACGAGTGTCGCGTTCTTTGGGAGGAAAAGATAGGCACAGCAAGGTTTGCACCATTAGGGGACTGAGGGACCGAAGGATTAGACTGTCTGTACCCACAGCAATTCAGCTATATGATCTTCAAGACAAGCTTGGACTCAACCAACCTAGCAAGGTGGTAGATTGGTTGCTTGAAGTCACCAAATCTGATATTGATAAACTCCCACCACTTCAATTTCCTCACTGTTTTACCCAGTTTCACCAACAAACTCCACTGTCAGGTACCTCTCAGTTCTCTCTTGGAAGTTTGTATGATGGTGTTAATTCCGCCTTTATAAAGGATGGGGGAAATAAAAACCTCATGGTAAAGTCAACAAGGTATTGGGATATAGATTCACAAAACCGTACGGAGTTAGCTGAAAGTGTCTCAACCTCCCAGAAGGGCAAGTTCTGGACCAAACCAAATGAACTAGAAAATCATCAAAATGGAAATGGTGGTAGTACTCGTAATAGAGAAGAATCTTCAGCTCATTGTAAGCTCTTCCCCCTTGGGACTAATAGCTCTTATTTACCTGGTTTGTCAAACAATGCCATGACACATAACTCCTACCACCATTCTGAGCCTTCAAGTCTATCTTTATCCCACCTTGGAAGCCATGGATTATTTCCTTCCCATTCAAGCAGTGGCAGTGGTGTGCAATTTTCATCTTCTAATTTCTATGGAGCATCTGGTCCCCAATTACTTTTTTGTCCACCTTCTGCTACACCATCTGCTTTTTACTCGGTGGAAACTGATCCAAGACAATCCAACAATGTTCAGATCTTTAGCTCAAGTTCCCAAGTCATTATGCCTCATCCTCTCATCCAATCTATTCATTCCACCAGTTCACCTCTTAGACGCCTTCCAACATCATTAAGCTCCAAGCTTTTTGATTCAGATAATAATGATCGTAGCCAACAAGGTAAGGGTGGTACTTGTTCTTGA 1101 0.4196 MSGMMNESSSKVQLANQQEGENIKTEKFSKAPSTSRSWSTFRNPRIVRVSRSLGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLNQPSKVVDWLLEVTKSDIDKLPPLQFPHCFTQFHQQTPLSGTSQFSLGSLYDGVNSAFIKDGGNKNLMVKSTRYWDIDSQNRTELAESVSTSQKGKFWTKPNELENHQNGNGGSTRNREESSAHCKLFPLGTNSSYLPGLSNNAMTHNSYHHSEPSSLSLSHLGSHGLFPSHSSSGSGVQFSSSNFYGASGPQLLFCPPSATPSAFYSVETDPRQSNNVQIFSSSSQVIMPHPLIQSIHSTSSPLRRLPTSLSSKLFDSDNNDRSQQGKGGTCS* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1898 366 ProSiteProfiles TCP domain profile. 55 113 IPR017887 -
Pvu3g1898 366 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 5 360 - -
Pvu3g1898 366 MobiDBLite consensus disorder prediction 332 366 - -
Pvu3g1898 366 Pfam TCP family transcription factor 55 211 IPR017887 -
Pvu3g1898 366 MobiDBLite consensus disorder prediction 177 210 - -
Pvu3g1898 366 MobiDBLite consensus disorder prediction 1 38 - -
Pvu3g1898 366 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 5 360 IPR005333 GO:0003700
Pvu3g1898 366 MobiDBLite consensus disorder prediction 177 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1898 Pvu-Chr3 39567229 39569207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1898 39 222 TCP Transcription Factor Family AT5G60970 49.495 1.68e-50 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pvu3g1898 TCP 9.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1898 - - pvu:PHAVU_003G183700g 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1898 3 39567229 39569207 Pvu9g2086 9 29911522 29913608 PCT