Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1890 ATGGAATCTTGGAGCTTTGTCCCTGAAGAAAAGGAGTGTGTCTCCAATGAGGCACTATCCCCTCCCAACACTCTCGGGAGGACCATAAATTCTTTCTTGGGCTGGGAACTCAAAACCCCATGTGGTTTCTCCAACGAGATGTTGGGTTTGGGTCAGCACACCATTGAGAATCAAGGTTTTGAGGAATTGGGTTTTCCAGAAATGTTGGGGAAACACTTGTCCGATGATCTAATTGCCAGTGTTTCAAGCAGAAAGGTGGATGCTGGAAGACAACACCAACCCAGTGACAGAATCACAGGAACTGTTGTGGATGCCCCAAGTGGCTTTTCTCAAAGAGGGGACTCAAATTCCAAGCTTTCAAACTCAAATTCCCTCATTGATTTGAAGCTGGGTCGATTTGCTGACCATGGAGATGCCATTGATCCGGGGTTTTCCAAAGTTTTGTCTTCTTCTGAGTCATCAACGCCTCCCAAGAGAGCTAGAGTTTCGGGGGTTCACTCTCAGACTGCATATTGCCAAGTCTATGGCTGTAACAAGGATCTCAGCTCCTGTAAAGATTACCACAAGAGGCACAAGGTGTGTGAGGTTCACTCCAAGACTGCCACCGTTATAGTCAATGGTATTGAGCAAAGGTTTTGCCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAACGAAGCTGCCGTAAACGCCTTGCAGGTCATAATGAGCGTAGAAGAAAGCCACAAATGGGGATTCATCCCGGAAAGTCTGGGAGGTTGCTTCAGCCATGTGGGGATAGCAGATTTCAGGGAACTATGCTAACATCATCCTTTATCCGCCCAGAGATGCTTCCTAGTGGGGTCATGTGTTCTGAGAAATATGGTATGAGTGGCTTCTGGCGACATATCAAAGCAGAACACGGAGCTGGCTTTAGGCATCTTTCTTCTATGCCTGTATCCAATGGACATCCTCAGTCAAGATCATTATTTCCGTCATATAACGGAAAACAATTTCCTTTTCTTCAAGAAAATTGTGCAACATCCACCACAGGAAGCATCTTCTGTGAGAGCAATAGCCACTATCCACCTACCCTCAGGGCACAAGATTCTGGGTTAAGGCCACTATTCCAGGACACCATAGGAAATGAGGACTTCAATGTTTTTGATACAGCATCAACTGTTCAAGGATTATCGGGGATTTCAGACTCATGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCTAGCCAATCATCAGGAATTCCCTTGGTTCACTCCTTGGTTATTCCAAGCAGTCATGGCCATCACTATAGCATGAGTCAGGTGTCTGAAAAGATAGGAATAAGCTCACAGACTTCTTCAAGCCGAGTGTCAGATAGTTTTCCTTCAGAACTGAATCATGCAGATGGAAGTCATCTCAGTCCTGTGTTAATATCAGACCATAATGATATTGTAAACTTTGATATGACAGATGGTATCTTCCATGGTTCTGAATTCATGAATGTGAAGGATAGACTTTCCTGCGAAGATGGTGCAACCATCGACTTGCTGCAATTGTCATCACAGCTTCAGCGAGTTGAGCATGAGAGGCAATCCATGCAGGTGAAGCAGGAGAATGATTCTTCTTGCACTCTGCGGATTACATAA 1650 0.4491 MESWSFVPEEKECVSNEALSPPNTLGRTINSFLGWELKTPCGFSNEMLGLGQHTIENQGFEELGFPEMLGKHLSDDLIASVSSRKVDAGRQHQPSDRITGTVVDAPSGFSQRGDSNSKLSNSNSLIDLKLGRFADHGDAIDPGFSKVLSSSESSTPPKRARVSGVHSQTAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTATVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQMGIHPGKSGRLLQPCGDSRFQGTMLTSSFIRPEMLPSGVMCSEKYGMSGFWRHIKAEHGAGFRHLSSMPVSNGHPQSRSLFPSYNGKQFPFLQENCATSTTGSIFCESNSHYPPTLRAQDSGLRPLFQDTIGNEDFNVFDTASTVQGLSGISDSCCALSLLSSQSQNSSSQSSGIPLVHSLVIPSSHGHHYSMSQVSEKIGISSQTSSSRVSDSFPSELNHADGSHLSPVLISDHNDIVNFDMTDGIFHGSEFMNVKDRLSCEDGATIDLLQLSSQLQRVEHERQSMQVKQENDSSCTLRIT* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1890 549 MobiDBLite consensus disorder prediction 86 118 - -
Pvu3g1890 549 ProSiteProfiles Zinc finger SBP-type profile. 169 246 IPR004333 GO:0003677
Pvu3g1890 549 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 42 549 IPR044817 GO:0003677
Pvu3g1890 549 SUPERFAMILY SBT domain 170 249 IPR036893 GO:0003677|GO:0005634
Pvu3g1890 549 Pfam SBP domain 172 245 IPR004333 GO:0003677
Pvu3g1890 549 MobiDBLite consensus disorder prediction 445 466 - -
Pvu3g1890 549 PANTHER 1 PROTEIN, PUTATIVE-RELATED 42 549 - -
Pvu3g1890 549 Coils Coil 517 537 - -
Pvu3g1890 549 Gene3D - 162 233 IPR036893 GO:0003677|GO:0005634
Pvu3g1890 549 MobiDBLite consensus disorder prediction 94 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1890 Pvu-Chr3 39480083 39485224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1890 126 287 SBP-box Gene Family AT1G69170 56.173 3.50e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pvu3g1890 SBP 4.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1890 - - gmx:100817547 945.266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1890 3 39480083 39485224 Pvu3g1890 3 39480083 39485224 ECH