Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1888 ATGGGGAGGGGAAGAGTGGAGTTGAAGAGGATCGAGAACAAGATCAATAGGCAAGTCTCGTTCTCAAAGAGAAGGTCTGGTTTGCTCAAGAAAGCTCGCGAGATCTCTGTGCTTTGCGATGCTGATGTCGCTCTCCTCGTCTTCTCCCCCAAAGGCAAACTTTTAGACTTCTCCAACCAACCTTCTGTGGAAAGAATTCTCCAACGGTATGAGAGGCATTCGTATGCAGAGAGGCAAGACGGTGCAGGTGATCAAGCACCAAATGAAAACTGGGTTATGGAACAAGAAAGACTGAAGGATAGGGTGGAGGCACTGCAGCAACGTCAAAGGAATTTTATGGGAGAAGAGCTTCATAGCTTAAATCTTAGAGGACTTCAGCGTTTAGAACAACAACTTGATTCTGCCCTCAAACACATTAGATCACGAAAGAACCAAACCATGCACGAATCTATTTCAAAGCTTCAGAAAAAGATTAAAGAAAAAGAGAAGGCACTGGGCCCTGAAGAGCATGAGGTTGCAAAATATCAGGGATGTGACTTCTGTCATTGTAACTAA 555 0.445 MGRGRVELKRIENKINRQVSFSKRRSGLLKKAREISVLCDADVALLVFSPKGKLLDFSNQPSVERILQRYERHSYAERQDGAGDQAPNENWVMEQERLKDRVEALQQRQRNFMGEELHSLNLRGLQRLEQQLDSALKHIRSRKNQTMHESISKLQKKIKEKEKALGPEEHEVAKYQGCDFCHCN* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1888 184 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pvu3g1888 184 Coils Coil 88 115 - -
Pvu3g1888 184 ProSiteProfiles K-box domain profile. 88 184 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu3g1888 184 Coils Coil 125 164 - -
Pvu3g1888 184 Pfam K-box region 86 163 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu3g1888 184 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Pvu3g1888 184 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pvu3g1888 184 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu3g1888 184 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu3g1888 184 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu3g1888 184 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu3g1888 184 PANTHER MADS BOX PROTEIN 1 167 - -
Pvu3g1888 184 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Pvu3g1888 184 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Pvu3g1888 184 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 1 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1888 Pvu-Chr3 39425975 39431373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1888 1 160 MADS-box Gene Family AT1G26310 64.815 4.05e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pvu3g1888 K-box 1.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1888 K09264 K09260 gmx:100798351 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1888 3 39425975 39431373 Pvu9g2098 9 30080599 30089684 PCT