Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1880 ATGACTGCCAACGGAGGGAGTTGTCTGAAGACTCATGATTTCCTGCAGCCACTGGAACGGCTAGAGACGAAGGGGAGTGCGAAGGAAGAAGCCACAGATGAAATATCATGGGTGGTTGAGAAGGCAGGACCCTCCGTTGAGCATCTCTTACCTGGAGGAATTGGGACTTACAGCATTAACCACATTTCGTATGTTAATAATAACAATAACAATAATAATCAAAGGCTTCCGAAAGCAGAGACGTCCCTTTTCGTGCGTCCAGCAACTAGTACGGACAGGAACGATGAGAACTCCAACTGCAGTTCATACACTACTTCCAGCGGTTTCACTTTGTGGGAAGACTCATCGGCGGGGAAGAGGGACAAAACAGGAAAGGAGAATAATTCGGGCGACAAACCCTCTATTGGAGAGTGTGCGGCGACAAAACTAGGACAGTGGACATCAACGGAGCGGACCTCGCAGTCGTTTTGCACCAATCATCACGATAGCTTCAGCTCTCGCTCTTCGTCTCAGACAACTGGGCAGAAGAGCCAGAGTTTTATTGAAATGATGAAGTCCGCAAGGGACAGTGCCCAGGATGAAGCCCTGGAGAACGAAGAAACATTTTTTCTCAAGAAAGAACCTTCCAATAACCAAAGAGATCTGACGGTGAAAGTGGATGGTAAGAGTACCGATCAAAAGCCAAACACACCAAGATCAAAACACTCTGCAACAGAACAGCGGAGAAGGAGCAAAATTAATGACAGATTCCAAATGCTAAGAGAGCTTATTCCACACAGTGACCAAAAGAGGGACAAAGCATCTTTTTTATTAGAGGTCATTGAGTATATTCATTTTTTACAAGAGAAGGTGCACAAGTATGAAGGTTCATTTCAAGGGTGGAGTAACGAGCAAGAAAAATTGATGCCATGGCAGAGAAATAATGACAAGCCAGCAGAAAGCTTTCAACATCGTGGCACTGATAATGGGTCAAGTCCATCTCCAACACTGCTTTTTGCTTCAAAGAATGAGGAGAAAAATATTAGCATCTCCCCAACAATTCCTGGGAGTACCCAGAATGTAGAATCTGGCTTGAGTACACCAACTACCTCCAAGACAATGGACCATCAGGCTGGAATAATGAACAAGGCTTTTCCAATTCCTATTTCTTCACAGCTAAATTTCTTCTCTCCAGCACAAATGAGCGGTCCAGGTGGCTTAGTGTCTCAGCTCGCGCATAGACCGGGTTCTGATGCCGAGAACAAATATCAACCTTCAGTGGAGTGTCAGACCATGGCGGCTACCAGTGAAAAGCTGAAAGAGAAAGAACTCGCTATTGAAGGTGGTGCAATTAGCATATCAAGTGTGTACTCAAAAGGGTTGCTGCATACGCTTACACATGCACTGCAAAGTTCAGGGGTGGATTTGTCACAGGCTAGCATCTCAGTGCAAATTGAACTTGGTAAGCAGGCAAACATCAGACCAACAATACCAGTGTCAGTGTGTAGTGCTAAGGATGGTGAAGTACCTTCTAACAACCAAAAGGTGATGCGCTCTAGAGTTGCTAGCTCTGGGAAGTCTGACCAAGCAATTAAGAAGCTAAAGATCTGCAGAAATTAA 1599 0.4509 MTANGGSCLKTHDFLQPLERLETKGSAKEEATDEISWVVEKAGPSVEHLLPGGIGTYSINHISYVNNNNNNNNQRLPKAETSLFVRPATSTDRNDENSNCSSYTTSSGFTLWEDSSAGKRDKTGKENNSGDKPSIGECAATKLGQWTSTERTSQSFCTNHHDSFSSRSSSQTTGQKSQSFIEMMKSARDSAQDEALENEETFFLKKEPSNNQRDLTVKVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWSNEQEKLMPWQRNNDKPAESFQHRGTDNGSSPSPTLLFASKNEEKNISISPTIPGSTQNVESGLSTPTTSKTMDHQAGIMNKAFPIPISSQLNFFSPAQMSGPGGLVSQLAHRPGSDAENKYQPSVECQTMAATSEKLKEKELAIEGGAISISSVYSKGLLHTLTHALQSSGVDLSQASISVQIELGKQANIRPTIPVSVCSAKDGEVPSNNQKVMRSRVASSGKSDQAIKKLKICRN* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1880 532 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 230 280 IPR011598 GO:0046983
Pvu3g1880 532 Gene3D - 228 302 IPR036638 GO:0046983
Pvu3g1880 532 MobiDBLite consensus disorder prediction 308 365 - -
Pvu3g1880 532 MobiDBLite consensus disorder prediction 501 519 - -
Pvu3g1880 532 MobiDBLite consensus disorder prediction 317 365 - -
Pvu3g1880 532 MobiDBLite consensus disorder prediction 154 179 - -
Pvu3g1880 532 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 228 301 IPR036638 GO:0046983
Pvu3g1880 532 MobiDBLite consensus disorder prediction 111 137 - -
Pvu3g1880 532 Pfam Helix-loop-helix DNA-binding domain 232 281 IPR011598 GO:0046983
Pvu3g1880 532 MobiDBLite consensus disorder prediction 501 520 - -
Pvu3g1880 532 CDD bHLH_AtBIM_like 229 305 - -
Pvu3g1880 532 SMART finulus 236 286 IPR011598 GO:0046983
Pvu3g1880 532 PANTHER TRANSCRIPTION FACTOR BIM1 6 529 - -
Pvu3g1880 532 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 6 529 IPR044295 GO:0003700|GO:0006351|GO:0046983
Pvu3g1880 532 MobiDBLite consensus disorder prediction 202 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1880 Pvu-Chr3 39336665 39343835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1880 6 513 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 45.198 6.28e-109 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu3g1880 HLH 4.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1880 - - gmx:100808016 813.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1880 3 39336665 39343835 Pvu3g1880 3 39336665 39343835 ECH