Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1879 ATGGGATCGTCGTCGGCGTCGTTGAGTTCTCCAAAGAAGAGAGTGAGATCCCAAGTAGAGGAGGATGAGGACGAGGAAGAGAGCGTTTGTTGCGGGATTTGCTACGCGGGGCGAGGGGTTTCCATCGCAGGGGAAATCGATTGCTGCAGCCACTACTTTTGCTTTGTCTGCATCATGGAATGGTCCAAGCACGAGTCTCGATGCCCAATTTGTCGCCAGAGATTTTCCAACGTTCGCAGGCTCTCTATGCCTGGCGTCTTTTCTTTCTCTAGGGACGTGAAGGTCCCTCATCGTGACCAGGCCTATCATCCTAATGGAAATGTGGCAATTGGCCCTGTAGATTCTTATGCTGAAACCAAATGTGGTGTTTGTCATGCTGGGACAGATGAAAATCTTCTACTACTTTGTGATCTTTGTGATACTGCTTCACACACATACTGTGTTGGCCTGGGATATACTGTTCCTGAAGGTGATTGGTTTTGTCACGATTGTGCTATTTCCCGGGAGACCAATGCCAATGAAGAATCAGAACAACAAAATGTTGTGCCAGAGGGTGAACCCAGTGAAACCGTTGATATCTTTGATATTGTGAGGGAAACAGGCAGTCGGGTGGTTAAAAGACCAAGAACATCTCCGTTACAACAGAACGTGTTATCTCCTTCTGCTATTCCTTTATCAGATAGGTTAAGCAGATTCAAAGGAAAAATTCCTGCCACAGGTTTCCATAGTATGCAGCGTAATGTACAGGCATTTCGTGAAAACTGGAATGCTTTGAGGAGTGGTTCATTAGAGTTCCATTGTAATGCGGATCAACCTAGCAGTAAAGTTAGTCAAAAGCAAGATTCTAGATCCTTATCACATGGCACATTATATGATTCACATTCTAGGGCTTCCACAAGCATGCAACAATCCACTGTCCAAGGTGGTCCTACTAACAAAACGTTGAATGAGAGAGTCTATAAAGATGACGCTGACAAGGCTTGGAAAATGGTGGACAGGGCAAAGATGATGCTACTGACTCGTCAAAGAACTAGCAGCAATCGGCAGGGAGTAGATAGACCCTCATGCAGTGGAGGAGCTTGTAAAACATCAGTTGAACATTGTAATTTCCCAGAACTGAAGGATCAACATTCGAAAGCATTAGACTTGAGGAACACTAAGAAAGAAAAACAGTGTGACTATTCTAGACGTGTCCAGAATTTCAAAAATTGCTCGACCCTAAAGTTGGAAGAGAAAAAGAAAAATAGGGTTAGATGTGAGGAGATGATACACAGTGTGAGGGACCATACTACTCATCCAGAAGGATATTGTGAAAGTTCATTGTCCAGAAAGGTCCCTACTAATATCCAGGGTGGTGTTCCCTGTGGTGAAGAAGAGAGAAATGCTTGCCAGGTAACTTCGGCAGATTTAGCTTCCTCGAGTGGCAAGTTTGTTAGTCTGCTCTCCTCTTGTAGGGACGTGGATCTTGTCAATGGAGAAAAGATATTAGCTAGAAGTTGCGAGGATGGAAGCACAAGAAAAACTGACGATGCAAAAACTGAGATCCAGTCTCTTGTTAAATTGAATCTGAAGCTCTTAACCAGAGATAAAAAATTAGGTTTTGATACCTTCAAGGTAGTTGCAAGGCAGGCCACCCATACCATCTTGGCTGCTTGCAGTTCTGAGCAGCAAAAGTGCAGCACATCCTCCTCTTGCTCAGTTTGCTGTCATTCCGACAATACCCCCCAGTTTCAGAAATCTACTTTAATGCCTAACTGTTGCAGGCAATGCTTTTACGCCTTTGTAAACAATGTTGTCAGTTCCACCATGACGGAGAAAGGTTGCGCTTGA 1830 0.4432 MGSSSASLSSPKKRVRSQVEEDEDEEESVCCGICYAGRGVSIAGEIDCCSHYFCFVCIMEWSKHESRCPICRQRFSNVRRLSMPGVFSFSRDVKVPHRDQAYHPNGNVAIGPVDSYAETKCGVCHAGTDENLLLLCDLCDTASHTYCVGLGYTVPEGDWFCHDCAISRETNANEESEQQNVVPEGEPSETVDIFDIVRETGSRVVKRPRTSPLQQNVLSPSAIPLSDRLSRFKGKIPATGFHSMQRNVQAFRENWNALRSGSLEFHCNADQPSSKVSQKQDSRSLSHGTLYDSHSRASTSMQQSTVQGGPTNKTLNERVYKDDADKAWKMVDRAKMMLLTRQRTSSNRQGVDRPSCSGGACKTSVEHCNFPELKDQHSKALDLRNTKKEKQCDYSRRVQNFKNCSTLKLEEKKKNRVRCEEMIHSVRDHTTHPEGYCESSLSRKVPTNIQGGVPCGEEERNACQVTSADLASSSGKFVSLLSSCRDVDLVNGEKILARSCEDGSTRKTDDAKTEIQSLVKLNLKLLTRDKKLGFDTFKVVARQATHTILAACSSEQQKCSTSSSCSVCCHSDNTPQFQKSTLMPNCCRQCFYAFVNNVVSSTMTEKGCA* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1879 609 MobiDBLite consensus disorder prediction 1 20 - -
Pvu3g1879 609 MobiDBLite consensus disorder prediction 269 314 - -
Pvu3g1879 609 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 100 IPR013083 -
Pvu3g1879 609 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Pvu3g1879 609 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Pvu3g1879 609 SUPERFAMILY FYVE/PHD zinc finger 114 166 IPR011011 -
Pvu3g1879 609 SUPERFAMILY RING/U-box 18 79 - -
Pvu3g1879 609 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 186 IPR013083 -
Pvu3g1879 609 SMART ring_2 31 71 IPR001841 -
Pvu3g1879 609 Pfam PHD-finger 121 165 IPR019787 -
Pvu3g1879 609 PANTHER F18C1.6 PROTEIN 8 607 - -
Pvu3g1879 609 PANTHER 2X PHD DOMAIN CONTAINING PROTEIN-LIKE 8 607 - -
Pvu3g1879 609 SMART PHD_3 120 165 IPR001965 -
Pvu3g1879 609 MobiDBLite consensus disorder prediction 269 315 - -
Pvu3g1879 609 ProSiteProfiles Zinc finger PHD-type profile. 118 167 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1879 Pvu-Chr3 39320477 39327307 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1879 112 182 C2H2 Transcription Factor Family AT3G01460 36.111 5.18e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pvu3g1879 PHD 7.5e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1879 - - gmx:100808541 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1879 3 39320477 39327307 Pvu3g1879 3 39320477 39327307 ECH