Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1877 ATGGCAGATGTAACCACCTACCCCCGCCACCACCGCCACCCAGACGATGACCAAACCCTGATTCCTTTCCCTTATTGGGACTTAGACTTCGATTTTGACCCCGAATTCCATCCTAACCCTTTCTCCCTCACTGACCGCGAGAATCAGGTCAATTTCGTAATGGATCTCTTTCACCAGCGCGTCGAACAGTCGCAACTCACCGATCCCCTCTCTAATGACGCCTTTTTCGGTGTCATCGACGCCCTCGACGACCTTGGCTTCCCCACCGCCGACGACTTATTCGTCGGACGCCGGCTCTCCGTCGGATCTGACTCCGACGAATCGCTCTTCCAGTCCGGAAACGTCGGCAGCGTGTTTGGGATGTGCACGCACTCGGAGGAAGAGTACAACGTGAACGACGACGTTTCGAGCATCCCTCTCTGCTTGGACGCGCTTCAATTAGAAGACAACAGAGACAGTTACGAGGATTTCGAGTGGGAGGAAGTGGTCGACGAGAGAGAAGTTCTGAGCATGCTCGACGACACCTCCGTTTCCGTCTCTGTGGGAATCGAAGAGGAAAGGGAGGAGGAAGTAGAATTTGAATTGGAGGCCAACAATTTGGGATGGCAGGTTCTGTTGAACGCCAATGTGGAGGGAACGAATTCCGAGCCTTATTTCGGGGACAACGAGGATTTCGTATACGCCGCGGAGTACGAAATGTTCGGCCAATTCAACGAGGAATCCTTCGTTGGGAAGCCTCCGGCTTCCATCTCCGCCGTGAGGAGCCTTCCGGCGGCGGTCGTGAGCGCTGCTGACGTGGCGAACGAAAACGTGGTTTGCGCGGTCTGTAAGGAGGAGTTTGGCGTTGGGGAAGGGGTGAAGCAGTTACCGTGTTCGCATCGTTACCATGCGGACTGCATTGTGCCATGGTTGGGGATAAGGAACACGTGTCCTGTTTGTCGCTTTGAGTTTCCCACTGATGATGCTGATTATGAGCGGAGGAAGGCTCATAGATCTGTTATGTGA 1005 0.5423 MADVTTYPRHHRHPDDDQTLIPFPYWDLDFDFDPEFHPNPFSLTDRENQVNFVMDLFHQRVEQSQLTDPLSNDAFFGVIDALDDLGFPTADDLFVGRRLSVGSDSDESLFQSGNVGSVFGMCTHSEEEYNVNDDVSSIPLCLDALQLEDNRDSYEDFEWEEVVDEREVLSMLDDTSVSVSVGIEEEREEEVEFELEANNLGWQVLLNANVEGTNSEPYFGDNEDFVYAAEYEMFGQFNEESFVGKPPASISAVRSLPAAVVSAADVANENVVCAVCKEEFGVGEGVKQLPCSHRYHADCIVPWLGIRNTCPVCRFEFPTDDADYERRKAHRSVM* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1877 334 PANTHER - 15 72 - -
Pvu3g1877 334 PANTHER - 89 332 - -
Pvu3g1877 334 ProSiteProfiles Zinc finger RING-type profile. 273 314 IPR001841 -
Pvu3g1877 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 320 IPR013083 -
Pvu3g1877 334 SMART ring_2 273 313 IPR001841 -
Pvu3g1877 334 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 89 332 - -
Pvu3g1877 334 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 15 72 - -
Pvu3g1877 334 CDD RING-H2_RNF126_like 273 314 - -
Pvu3g1877 334 Pfam Ring finger domain 273 314 IPR001841 -
Pvu3g1877 334 SUPERFAMILY RING/U-box 266 320 - -
Pvu3g1877 334 Coils Coil 333 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1877 Pvu-Chr3 39308941 39310508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1877 137 320 C3H Transcription Factor Family AT5G60820 49.519 4.60e-51 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1877 - - gmx:100794303 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1877 3 39308941 39310508 Pvu3g1877 3 39308941 39310508 ECH