Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1860 ATGAAGAAGGAGAATGAAAGTGTTACTGTTACAAAGAAGGTCTTCTCGGTCTCCAGGTTCCTTTTCAATCATTCAGTTTTACCGAATGATGGAGAAATCTATAAAGATACTCTGACGCTAAAGATGTTGTTTGGATTTAAATACACCTCAAAACTTTCACACCAATCTCATAACCCAAACAAGAATCTTCCTTTGATGCCTATTGAAATAGACAAGTCCTATGAGAAGAGAGTCATGAAGATTCCAAAAGTAGGAAAGAAGATTGAGAAAAAGTTTCTTGGGGTGAGACAAAGGCCTTCAGGAAGATGGATTGCTGAGATCAAGGAATCCTCACAGAAGCTAAGGCTTTGGTTAGGAACTTTTGACAAAGCAGAAGAAGCTGCCTTGGCTTATGACTGTGCTGCAAGGCTTCTCAGAGGGAGAAATGCCAAAACAAACTTTCCAAACCCTGGAACCATGAACACTCATGAAGAAGACTACAGCATTTTGGGCAAGAATCCAAGGTCTTACCAACTTCTTAGGCATGCAGTTATGAAGAACCACGCACTTTCAACATCTCTTTATTCCACATTCATGCCTTGGAAAAACCAGATCATGACGAGAGATGAACATGACACCCTTGTTGAGGAAACTGTAGTTTGTTCCATTCCTGAACAAGGCTCTGGCTGTTGTGGAATTTCATTTGGAAGTTCTAAGGTTTATTCTTCTGTTGTTGTTGCTCCTTCTTTCAGTGCTTCTTCTCATGATGAAACACCCTAA 759 0.4018 MKKENESVTVTKKVFSVSRFLFNHSVLPNDGEIYKDTLTLKMLFGFKYTSKLSHQSHNPNKNLPLMPIEIDKSYEKRVMKIPKVGKKIEKKFLGVRQRPSGRWIAEIKESSQKLRLWLGTFDKAEEAALAYDCAARLLRGRNAKTNFPNPGTMNTHEEDYSILGKNPRSYQLLRHAVMKNHALSTSLYSTFMPWKNQIMTRDEHDTLVEETVVCSIPEQGSGCCGISFGSSKVYSSVVVAPSFSASSHDETP* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1860 252 Pfam AP2 domain 91 140 IPR001471 GO:0003700|GO:0006355
Pvu3g1860 252 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 49 250 - -
Pvu3g1860 252 ProSiteProfiles AP2/ERF domain profile. 91 148 IPR001471 GO:0003700|GO:0006355
Pvu3g1860 252 CDD AP2 90 149 IPR001471 GO:0003700|GO:0006355
Pvu3g1860 252 Gene3D AP2/ERF domain 90 149 IPR036955 GO:0003700|GO:0006355
Pvu3g1860 252 PRINTS Ethylene responsive element binding protein signature 92 103 IPR001471 GO:0003700|GO:0006355
Pvu3g1860 252 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Pvu3g1860 252 SUPERFAMILY DNA-binding domain 91 148 IPR016177 GO:0003677
Pvu3g1860 252 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110-LIKE 49 250 - -
Pvu3g1860 252 SMART rav1_2 91 154 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1860 Pvu-Chr3 39171521 39174562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1860 91 149 AP2-EREBP Transcription Factor Family AT5G19790 71.186 9.71e-25 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu3g1860 AP2 2.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1860 - K09286 pvu:PHAVU_003G180000g 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1860 3 39171521 39174562 Pvu3g1860 3 39171521 39174562 ECH