Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1853 ATGGAGCCTATGGACATCATCGGCAAATCAAAGGAAGACGCGTCGCTTCCTAAAGCAACAATGACAAAAATTATTAAAGAAATGTTACCCCCAGATGTACGTGTTGCAAGAGATGCCCAAGATCTATTGATCGAGTGCTGTGTAGAGTTTATAAACCTCATCTCCTCAGAATCCAATGAAGTATGCAACAGAGAGGAAAAACGTACAATCGCACCTGAGCATGTATTGAAGGCTCTACAGGTTCTTGGATTTGGCGAGTACATCGAAGAAGTTTATGCAGCATATGAACAGCACAAGATGGAGACCATGCAGGACACTTTAAAGGGTGGTAAATGGAGCAATGGAGCTGAGATGACCGAGGAAGAAGCATTAGCAGAGCAGCAAAGGATGTTTGCAGAGGCACGTGCTAGAATGAATGGTGGAGCCATTGCTTCCAAGCAGCCAGATACTGACCAAAGTTTAGATAGTTAA 471 0.4374 MEPMDIIGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNEVCNREEKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKMETMQDTLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGGAIASKQPDTDQSLDS* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1853 156 SUPERFAMILY Histone-fold 12 143 IPR009072 GO:0046982
Pvu3g1853 156 Gene3D Histone, subunit A 5 143 IPR009072 GO:0046982
Pvu3g1853 156 PANTHER PROTEIN DR1 HOMOLOG 1 155 IPR044255 -
Pvu3g1853 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1853 Pvu-Chr3 39110625 39114537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1853 1 152 CCAAT-DR1 Transcription Factor Family AT5G23090 84.416 9.51e-96 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pvu3g1853 CBFD_NFYB_HMF 3.3e-22 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1853 K21751 - gmx:100807912 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1853 3 39110625 39114537 Pvu3g1853 3 39110625 39114537 ECH