Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1850 ATGACAATGGCAGAAGCAGAAGAAAACCTTCAAGCCTCACCGATGGACGAAAAGAAGAACAAAAATCAGAAGAATAAGAAGAAGCGCGAGAAAAAACGTCCTCGGGATAATGCTACCGAGGAGCGTCCAGAAGAAGAGGAGAATGGGAATGACACAGATAGCGATGGAGAATCCTCGAAGAATAAGAAGAAGAATAAGAAGAAGAAAGTGGAAGGAGAAAGTGAAGGGGAAGAGAGAAAGGTGAAGAACAATGGTGGGTCTGGAATTATGAGCTCCGAGTCATTTGAATCTCTGGGATTGTCTGAACCTACTTATAAGGCCATCATGGATATGGGATTCCAGCACATGACTCAGATTCAAGCGAGAGCAATTCCGCCTCTCTTGATTGGAAAAGATGTGCTTGGTGCTGCAAGAACCGGTTCTGGAAAAACTCTGGCCTTCTTAATTCCTGCTGTGGAGCTGTTGTACAATGTTAAGTTTACACCCCGTAATGGAGCTGGTGTTGTTGTTATATGCCCAACTAGAGAGCTTGCAATACAGACACATGCTGTGGCCAAGGAGCTTCTCAAGTATCATTCACAAACTCTTGGATTGGTTATTGGAGGTTCAACTAGAAAACTTGAAGCTGCACGCCTAGCTAAAGGGATAAATCTATTGGTAGGAACTCCTGGTCGTCTTCTAGATCATCTTCAAAACACAAAAGGATTCATATACAAAAACTTGAAGTGTCTCATGATTGATGAAGCTGACAGAATCTTAGAAGCAAACTTTGAAGAGGAAATGAAACAGATTATTAAGATCCTTCCAAAGAGTAGGCAAACAGCTTTATTTTCCGCGACACAAACAAAGAAGGTTGAGGATCTTGCCCGCTTGTCATTTCAGACAACTCCCATCTATATTGATGTGGATGATGGGAGAACCAAGGTCACAAACGAAGGGTTGCTTCAGGGTTATGTTGTTGTACCCTGTGCCAAGCGCTTTATTGTTCTCTATTCTTTTTTGAAGAGACACCAGTCAAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCAGACATTCTTAATCTCGTTCAATTGAATTGCTCAAGTATTCATGGAAAACAAAAGCAGCAGACACGGACAACAACCTTTTTTGATTTTTGCAAAGCAGGAAAGGGGATCTTGCTATGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGCTGTGGACTGGATTGTGCAATATGATCCACCTGATGAACCTAAGGAATATATCCACAGGGTCGGTAGAACTGCTCGTGGTGAAGGTGGAAAAGGAAATGCTTTGCTTTTTCTAATTCCTGAAGAATTGCAATTTCTCCGCTACCTGAAGGCAGCTAAGGTCCCTGTTAAAGAGTATGCATATGATGAAAAGAAGGTGGCTAACGTACAATCTCACCTGGAGAATTTGGTTGTCAACAATTTTTATTTGAACAAGATGGCGAAAGAAGCTTATAGATCATACATATTAGCTTATAATTCACATTCCATGAAGGATATATTCAATGTTCACCGTCTTGATTTTCAGGCTGTTGCTTCTTCGTTTTGTTTCTCAAACCCACCAAACGTGACACTAAACATAAACAGCAGTAAGCAAAGGAATAAAACGCGTAAAGTTGATGGAGGTAGACACGGATTCAACGACAGCAATCCCTATGGAAAGAGAGGTGCTGATGACAGGCGGCAGTTTGTGAGGCACTAG 1737 0.4168 MTMAEAEENLQASPMDEKKNKNQKNKKKREKKRPRDNATEERPEEEENGNDTDSDGESSKNKKKNKKKKVEGESEGEERKVKNNGGSGIMSSESFESLGLSEPTYKAIMDMGFQHMTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYNVKFTPRNGAGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSTRKLEAARLAKGINLLVGTPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKSRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRTKVTNEGLLQGYVVVPCAKRFIVLYSFLKRHQSKKVMVFFSSCNSVKFHADILNLVQLNCSSIHGKQKQQTRTTTFFDFCKAGKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYAYDEKKVANVQSHLENLVVNNFYLNKMAKEAYRSYILAYNSHSMKDIFNVHRLDFQAVASSFCFSNPPNVTLNINSSKQRNKTRKVDGGRHGFNDSNPYGKRGADDRRQFVRH* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1850 578 MobiDBLite consensus disorder prediction 1 94 - -
Pvu3g1850 578 CDD DEADc_DDX18 104 301 IPR044773 GO:0003724|GO:0005524
Pvu3g1850 578 Gene3D - 37 303 IPR027417 -
Pvu3g1850 578 Pfam Domain of unknown function (DUF4217) 475 535 IPR025313 -
Pvu3g1850 578 Pfam Helicase conserved C-terminal domain 329 433 IPR001650 -
Pvu3g1850 578 SMART helicmild6 353 434 IPR001650 -
Pvu3g1850 578 MobiDBLite consensus disorder prediction 539 578 - -
Pvu3g1850 578 Coils Coil 60 80 - -
Pvu3g1850 578 SMART ultradead3 112 317 IPR014001 -
Pvu3g1850 578 CDD SF2_C_DEAD 314 444 - -
Pvu3g1850 578 Pfam DEAD/DEAH box helicase 117 288 IPR011545 GO:0003676|GO:0005524
Pvu3g1850 578 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 93 121 IPR014014 GO:0003724
Pvu3g1850 578 MobiDBLite consensus disorder prediction 68 82 - -
Pvu3g1850 578 Gene3D - 314 551 IPR027417 -
Pvu3g1850 578 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 124 299 IPR014001 -
Pvu3g1850 578 PANTHER RNA HELICASE 60 568 - -
Pvu3g1850 578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 239 448 IPR027417 -
Pvu3g1850 578 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 245 253 IPR000629 -
Pvu3g1850 578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 301 IPR027417 -
Pvu3g1850 578 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 60 568 - -
Pvu3g1850 578 SMART DUF4217_3 474 537 IPR025313 -
Pvu3g1850 578 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 326 473 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1850 Pvu-Chr3 39077201 39082113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1850 93 452 Eukaryotic Initiation Factors Gene Family AT3G13920 31.593 6.64e-48 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1850 K13179 - gmx:100798885 1020.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1850 3 39077201 39082113 Pvu3g1850 3 39077201 39082113 ECH