Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1841 ATGGGTGTGGACTACTATAAGATTTTGCTGGTTGACAAGAATGCCACGGAGAAAGATTTGAAGAAAGCTTACAAAAAGCTTGCCTTGAAATGGCACCCCGACAAGAATGCAACCAATAAGGAAGAGGCTGAGACTAAGTTCAAGCAGATGTCTGAAGCCTACGAGGTTTTGAGTGATCCCAAGAAGAGAGCAATTTATGATCAGTATGGAGAAGAAGGGCTGAAAGGGCAAGTACCGCCTGCAGATGCTGGTGGGCCAACGTTCTTCCAAACTGGGGATGGTCCAACAGCATTCAGGTTCAATCCAAGACACGCAGATGACATTTTTGCTGAGATTTTCGGGTTTTCAAGCCCATTTGGTGATGGTGGTGGTGGTGGTGGCATGAGGGGTGGTTCCTTCGGTGGAGGTTTTGACGAAGATATATTGGGTTCATTTGGAGGAGAAAGGCCAATGAAACAGGGTCCACGCAAGGCACCTCCTATAGAGAAGAGGTTGCCTTGCACCCTTGAAGAGCTCTATAAGGGCACTACCAAAAAAATGAAGATCACAAGGGAGATTGCTGATGCAAGTGGGAAGACATTACCTGTGGAGGAAATATTGACCTTGGAAATTAAACAAGGGTGGAAGAAGGGGACAAAGATCACATTCACAGAGAAAGGAAATGAGCTGCCAAATGTGATTGCTTCGGATATTGTGTTTGTTATTGATGAGAAACCTCACCCAGTGTTTACTAGAGATGGTAACGATTTGGTTGTAACACAAGAAGTGTCACTTGCAGAAGCTCTTTCGTGTTACACTCTCCATTTTACAACACTAGATGGCAGGGTTCTAAACATTACCATTAACAGTGTGATTCATCCAAACTATGAAGAGGTGGTCCCCAGGGAAGGGATGCCAATTTCAAAAGACCCTTCAAAGAAAGGTAATCTTAGAATCAAATTCAACATCAAATTCCCAGAAAAGTTGACATCAGAGCAAAAGGCCGGAATTAAGAAGCTGCTGCAACATTGA 1011 0.4402 MGVDYYKILLVDKNATEKDLKKAYKKLALKWHPDKNATNKEEAETKFKQMSEAYEVLSDPKKRAIYDQYGEEGLKGQVPPADAGGPTFFQTGDGPTAFRFNPRHADDIFAEIFGFSSPFGDGGGGGGMRGGSFGGGFDEDILGSFGGERPMKQGPRKAPPIEKRLPCTLEELYKGTTKKMKITREIADASGKTLPVEEILTLEIKQGWKKGTKITFTEKGNELPNVIASDIVFVIDEKPHPVFTRDGNDLVVTQEVSLAEALSCYTLHFTTLDGRVLNITINSVIHPNYEEVVPREGMPISKDPSKKGNLRIKFNIKFPEKLTSEQKAGIKKLLQH* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1841 336 Pfam DnaJ domain 4 67 IPR001623 -
Pvu3g1841 336 Pfam DnaJ C terminal domain 161 319 IPR002939 -
Pvu3g1841 336 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 335 - -
Pvu3g1841 336 Gene3D - 240 320 - -
Pvu3g1841 336 CDD DnaJ 4 59 IPR001623 -
Pvu3g1841 336 PRINTS DnaJ domain signature 6 24 IPR001623 -
Pvu3g1841 336 PRINTS DnaJ domain signature 24 39 IPR001623 -
Pvu3g1841 336 PRINTS DnaJ domain signature 42 62 IPR001623 -
Pvu3g1841 336 PRINTS DnaJ domain signature 62 81 IPR001623 -
Pvu3g1841 336 SUPERFAMILY HSP40/DnaJ peptide-binding domain 155 250 IPR008971 GO:0006457|GO:0051082
Pvu3g1841 336 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Pvu3g1841 336 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Pvu3g1841 336 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 13-LIKE 1 335 - -
Pvu3g1841 336 Gene3D - 160 238 - -
Pvu3g1841 336 SUPERFAMILY Chaperone J-domain 3 124 IPR036869 -
Pvu3g1841 336 SUPERFAMILY HSP40/DnaJ peptide-binding domain 242 328 IPR008971 GO:0006457|GO:0051082
Pvu3g1841 336 SMART dnaj_3 3 62 IPR001623 -
Pvu3g1841 336 CDD DnaJ_C 159 322 - -
Pvu3g1841 336 Gene3D DnaJ domain 3 122 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1841 Pvu-Chr3 39018639 39020292 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1841 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 8.50e-10 58.2