Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1828 ATGTCATCAAGTGGAACCCTTTGGAGCTATGAGGAAGAAAAAGCATTTGAGAATGCCATAGCTATGCATTGGATTGAGGAAGCCTCAAAAGAGCAATGGGAGAAAATTGCTTCAGCAGTTCCCAGCAAGAGCATGGAAGAAGTGAAGCAGCATTACCAGGTTCTAGTAGAGGATGTAAGTGCAATAGAGGCAGGTCACGTACCATTCCCCAACTATGCTTATGAGGAAACCACATCTTCAAATAAGGACTTCCATGGATCTTCCAAGGCCACAAGTTCAGATAAAAGATCAAATTGTAATTATGGAAGTGGTTTTTCTGGATTAGGCCATGACTCCACCACTCACAGTAGTGGCAAAGGAGGCTTGTCAAGGTCATCAGAACAAGAAAGGAGAAAAGGAATTCCCTGGACTGAGGAGGAGCACAGGTTATTTTTACTTGGTCTAGACAAGTTTGGAAAAGGAGATTGGAGAAGCATTTCAAGGAACTTTGTGATATCTAGGACTCCCACACAAGTGGCAAGCCATGCACAGAAGTACTTCATAAGGTTGAATTCTATGAATAGGGACAGAAGGAGGTCTAGTATCCATGATATAACTAGTGTGAACAATGGAGATGTGGCTAGTAGTCAGGCACCAATTACAGGGCAGCATAGTAGCACAGTTTCTTCAAGTACAATGGGTGTAGGACAATCCCTGAAGCATAGAGTCCAGGGTCATATACCACCTGGTTTAGGCATGTATGGAACACCAGTTGGTCATCCTGTGGCTGCTCCTCCAGGGCATATGGCCTCTGCAGTTGGAACTCCTGTCATGCTTCCTCCTGGACCCCACCCTCATCCCCATCCCCATCCCCACCCCCATGCTCATCCTCATCCACCTTATGTTCTTCCTCTTGCTTACCCAATGGCACCTCCACCAATGCATCAATAA 930 0.457 MSSSGTLWSYEEEKAFENAIAMHWIEEASKEQWEKIASAVPSKSMEEVKQHYQVLVEDVSAIEAGHVPFPNYAYEETTSSNKDFHGSSKATSSDKRSNCNYGSGFSGLGHDSTTHSSGKGGLSRSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVASSQAPITGQHSSTVSSSTMGVGQSLKHRVQGHIPPGLGMYGTPVGHPVAAPPGHMASAVGTPVMLPPGPHPHPHPHPHPHAHPHPPYVLPLAYPMAPPPMHQ* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1828 309 ProSiteProfiles SANT domain profile. 1 52 IPR017884 -
Pvu3g1828 309 PANTHER TRANSCRIPTION FACTOR MYBS1 1 307 - -
Pvu3g1828 309 MobiDBLite consensus disorder prediction 103 123 - -
Pvu3g1828 309 MobiDBLite consensus disorder prediction 272 292 - -
Pvu3g1828 309 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Pvu3g1828 309 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Pvu3g1828 309 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Pvu3g1828 309 MobiDBLite consensus disorder prediction 103 134 - -
Pvu3g1828 309 CDD SANT 8 56 IPR001005 -
Pvu3g1828 309 Gene3D - 1 69 - -
Pvu3g1828 309 SMART sant 4 58 IPR001005 -
Pvu3g1828 309 SMART sant 132 182 IPR001005 -
Pvu3g1828 309 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Pvu3g1828 309 SUPERFAMILY Homeodomain-like 130 185 IPR009057 -
Pvu3g1828 309 CDD SANT 135 180 IPR001005 -
Pvu3g1828 309 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 132 182 IPR006447 GO:0003677
Pvu3g1828 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Pvu3g1828 309 MobiDBLite consensus disorder prediction 201 225 - -
Pvu3g1828 309 PANTHER TRANSCRIPTION FACTOR KUA1 1 307 - -
Pvu3g1828 309 SUPERFAMILY Homeodomain-like 8 62 IPR009057 -
Pvu3g1828 309 Gene3D - 134 186 - -
Pvu3g1828 309 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1828 Pvu-Chr3 38863384 38865060 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu3g1828 Myb_DNA-binding 1.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1828 - - vun:114176836 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1828 3 38863384 38865060 Pvu3g1828 3 38863384 38865060 ECH