Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1816 ATGTCGGACGAAGAGTCCTCCGGAGGCAACCAACCATCCATGGACCCTTCTTTAAGCCTCTCCGATCAGTCACTGTCCCTCAGTCTTTCCCAAGTTAAACTTCATGATGACTCAGTCAAGAAAGATCCCCGGAAAATTGCAAGAAAGTACCAGTTGGAGTTGTGTAAAAAAGCTATGGAGGAAAATATAATTGTATATTTGGGGACAGGGTGTGGGAAGACTCACATCTCTGTGCTTCTAATGCATGAGTTGGGTCATTTGATTCGGAAACCACAAAAGAACATATGTGTCTTTCTTGCCCCTACTGTGGCTTTAGTTCATCAGCAAGCAAAGGTTATAGCGGACACTACTGATTTTAAGGTTGGAATCTTCTGTGGAAGTTCCAAACGCTTGAAAAGTCACCAAGACTGGGAGCAGGAGATTGGACAATATGAGGTTCTTGTTATGACCCCACAAATATTACTTCACAACTTATCTCATTGTTTCATCACGATGGAAGTGATTGCACTTTTGATATTTGACGAATGTCATCATGCTCAAGTCAAAAGCAACCATGCTTATGCAGTAATCATGAAAAGTTTCTACAAAAGTAATTCTGCAAAGGTTCCTCGTATATTTGGCATGACCGCTTCCCCTGTTGTAGGAAAAGGGGCTTCTAGTGAAGCAAATCTAGCAAAAAGCATCAATAGTCTTGAACACATGCTTGATGCTAAGGTTTACTCTGTTGAAGTCAAGGAATTGAAATCTTTTGTTACCACTCCTGTGATTAATATATATCGTTATGTTTCAACTGCAAGTGGGGAAACTAGCTTGTACTTGAAAATTGAGGAGATTAAACGCCAGTGCATAGCAACCATTGGAAGGAGTGCAGAAGATCACCAGAAACGAATGAATACAAAGAAACTTTTGAACCGAATACATGATAATGTAATTTTCTGTCTACGAAATCTTGGCATTTGGGGAGCACTACAAGCTAGTAATATTCTTCTGAGTGGTGATCGTTCTGAGAGGCATGAATTAGTGGAGGTAGAAGGAAATTCAAGTGATGACTCTGTGTGTGACAATTATCTTGCTCAGGCTGCTGAACTATTTACTTCAGAGTGCATTATAGGTGACAATGTATCTGATGATTTATCTTCTTCGGAAATATTGAAAGAGCCATTTTTCTCAGCTAAGCTTTTACGACTCTTTGGGATACTGTTCAACTTTAGGTTGCAAAAGAACATGAAATGTATTATTTTTGTGAATAGAATTGTGACTGCAAGATCCCTGTCATACATACTTCAGAAGCTCCAGCTTCTAAAACAATGGAGGAGTGATTATCTAGTAGGAGTACATTCTGGGCTGAAGAGTATGTCACGAAAGACCATGAATATCATTGTTGATAAGTTTCGCTCTGGAGAGTTGAATTTGTTGGTTGCAACCAAAGTGGGTGAAGAAGGACTTGACATTCAGACATGTTGCCTTGTGATACGATTTGATCTTCCAGAAACTGTTGCCAGCTTTATACAGTCAAGAGGCCGTGCGCGAATGCCTCAGTCTGAATATGCTTTTTTGGTGGACAGTGGTAATAAGAAGGAGCTTGATTTAATTGATGGTTTTGCGAAAGATGAATACCGAATGAATACGGAAATTACTTTCCGAACATCTGATGAGACATACATCATCCCTGAGGAAAGAATTTTCAGAGTTGATTCGTCTGGTGCTTCTGTTAGTTCTGGATATAGTATTTCATTGCTTCACCAGTATTGTTCAAAGCTTCCACATGATGAGTATTTTGAGCCCAAGCCAAATTTTTATTTCTTAGATGATTCAGAGGGAATTGTTTGCCATATAAGATTGCCTTCCAATGCACCAATACACCAAATTTTGGGTGCACCACAGTTGTCTATGGAGGCTTCCAAAAGAGATGCTTGCCTGAAAGCAATAGAAGAACTGTATAAAATAGGTGCTTTGAGTGATTATCTCTTGCCAAAACAAGGTGATGCAGAACCGGAAGGACAGGTTTCTACTGATGAAGATGAATGTGAAGATGCCATCTCAAGAGGAGAATTACATGAGATGCTAGTTCCATCTGCCTTTGGACAGTCATGGATAAATGAGGATAAAGTTGTCCTTCTCAACTCGTACTACATAAAATTTTGTCCATGTCCAGAGGATAGGGTCTACAAAGAGTTTGGTCTTTTCATCATGGCCCGTCTTCCAATGGAGGCTGAGAAATTGGAACTTGATCTGCATCTTGCTCATGGACGATCTGTAATGACAAAATTTGTCCGATTTGGAGTTGTAGAATTTGACAAAGATGAGATTAAGATGGCAGAGAATTTTCAAGAAATGTTCCTCAAAATTAGTCTGGATAGATTTGAATTTGTTTCTGAGATTGTAAACTTGGGTACGGCTGCTGAATCTCACACAAGCTCATCGACCTTCTACCTTTTGCTTCCAGTCATATTTCAAGAATATAATGCCATGAAAGTAGATTGGAAGACAGTGAAGAGATGTCTTTGGTCACCAATTTTCAGGCATCCAGAGTATACTATGGATAAAAAAAAATTCCCTTTGGATATTCACTTGCAACTTGCCAATGGTTACGAAAGTGTAAGAGATGTCGAGAATAGTTTAGTGTATGCCCAACATAAAAAGACCTTTTATTTTGTCACAAATATTGATTATGAAAAGACTGGATTTAGTCCTCATAAAGAATCAGGCGCTTCAAGCTATGAGGATTACTTAATTGAAGGGTTTTCGATTCACCTCAAATACCCGAAACAACCGCTTCTGCATGTAAAACCACTCCCCAATTTGCATAACCTGCTACACAACCGAAAGCGTGAGGATGCAGAACCACAGGAGCTGGATGAATATTTAATTTATTTACCTCCTGAGCTATGTGAATTGAAAATAATCAGCTTTTCGAAGGATATTGGCAGTTCCATATCTTTGCTACCCTCAATTATGCATCGTCTTGGAAACTTGCTGGTGGCTATTGAACTAAAGCAAATGCTATCTTCTTCTTTTCCCGAGGCAGCTGAAGTTAGTGCCCTTAGGGTTTTAGAGGCTCTCACCACTGAGAAGTGTCAGGAGCGCTTTTCCCTTGAAAGACTTGAAGTGCTTGGTGATGCTTTCCTCAAATTTGTTGTTGCACGCCATTTTTTTCTCATGCATGACAGCCTTCATGAAGGAGACCTAACAAAGAGGCGATCCAATGCTGTAAATAATTCCAATTTATTAAAGTTGGCCATTAGGCGCAATTTGCAGATCTACATATGTGATCAGACATTTGATCCCTCTCAATTTTATGCATTAGGCCGTCCTTGCCCAATAATTTGTTGTAAAGAAATCAAAGAAAGCATACACTTTTGTGTAAATTCTGTGAAGGAGCAAGGGAAATTAACTGAAACCCGATGTAACAAAAATCATCATTGGTTACATAATAAAACAGTTGCTGATGTTGTGGAAGCTCTGGTTGGAGCATTCCTAGTTGACAGTGGTTTTAAAGCCGCAGTTGCTTTTCTTACTTGGATTGGCATACAAGTTGATTTTAAAGCATCACAAGTGGTTGATATTTGCACAGCAAGTGCTGCCTATATCCCTCTTTCTGCTGATATAGACATTCCTTCTCTTGAAAGTAAGCTAGGACATCAATTTTTTCACAAGGGTCTGCTTCTCCAGGCATTTGTGCATCCTTCTTACAATAAGCTTGGAGGAGGCTGTTATCAGCGATTGGAGTTTCTTGGAGATGCTGTCTTGGATTATTTGATTGCTTCATATCTATTCTCAGCTTATCCCAAACTAAAGCCTGGTCAATTGACAGATTTGAGATCATTGTCTGTTAACAATAAGGCCTTTGCCTGTGTAGCAGTAGATCGCAGTTTTGATAAATATCTTTTATGTGATTCAAATGGCTTGTCCGAGGCAATAAAAAAGTATGTAGAGTACGTTAGAAGACCTTCAACAGATAGTTCCATTAAAGAAGGGCCAAAATGTCCCAAGGCACTGGGTGACTTGGTGGAATCTTGTGTTGGTGCCATCCTTCTAGATTCTGGGTTCAATTTGAACAAAGTTTGGAAAATCATGACTTCGTTCTTGGACCCAATCATGAAATTCTCATCAAGCTTGCAGTTGAGTCCTATTAGGGATTTGCGAGAACTTTGCCAAGCTCATAATTTGGAGTTGGAGCTTCCATCAGTGTCATTAAAACTGACTAAACTGTTTTCAGTTGAAGTCAAAGTGAGTGGGGATAATGTATCTGAAACAGCTTCAGCGACTGGCCAAAATAAGAAGGAGGCTTGTAGAATTGCTTCACTGAAACTTTTTTCAAAGTTCAAG 4329 0.3943 MSDEESSGGNQPSMDPSLSLSDQSLSLSLSQVKLHDDSVKKDPRKIARKYQLELCKKAMEENIIVYLGTGCGKTHISVLLMHELGHLIRKPQKNICVFLAPTVALVHQQAKVIADTTDFKVGIFCGSSKRLKSHQDWEQEIGQYEVLVMTPQILLHNLSHCFITMEVIALLIFDECHHAQVKSNHAYAVIMKSFYKSNSAKVPRIFGMTASPVVGKGASSEANLAKSINSLEHMLDAKVYSVEVKELKSFVTTPVINIYRYVSTASGETSLYLKIEEIKRQCIATIGRSAEDHQKRMNTKKLLNRIHDNVIFCLRNLGIWGALQASNILLSGDRSERHELVEVEGNSSDDSVCDNYLAQAAELFTSECIIGDNVSDDLSSSEILKEPFFSAKLLRLFGILFNFRLQKNMKCIIFVNRIVTARSLSYILQKLQLLKQWRSDYLVGVHSGLKSMSRKTMNIIVDKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNKKELDLIDGFAKDEYRMNTEITFRTSDETYIIPEERIFRVDSSGASVSSGYSISLLHQYCSKLPHDEYFEPKPNFYFLDDSEGIVCHIRLPSNAPIHQILGAPQLSMEASKRDACLKAIEELYKIGALSDYLLPKQGDAEPEGQVSTDEDECEDAISRGELHEMLVPSAFGQSWINEDKVVLLNSYYIKFCPCPEDRVYKEFGLFIMARLPMEAEKLELDLHLAHGRSVMTKFVRFGVVEFDKDEIKMAENFQEMFLKISLDRFEFVSEIVNLGTAAESHTSSSTFYLLLPVIFQEYNAMKVDWKTVKRCLWSPIFRHPEYTMDKKKFPLDIHLQLANGYESVRDVENSLVYAQHKKTFYFVTNIDYEKTGFSPHKESGASSYEDYLIEGFSIHLKYPKQPLLHVKPLPNLHNLLHNRKREDAEPQELDEYLIYLPPELCELKIISFSKDIGSSISLLPSIMHRLGNLLVAIELKQMLSSSFPEAAEVSALRVLEALTTEKCQERFSLERLEVLGDAFLKFVVARHFFLMHDSLHEGDLTKRRSNAVNNSNLLKLAIRRNLQIYICDQTFDPSQFYALGRPCPIICCKEIKESIHFCVNSVKEQGKLTETRCNKNHHWLHNKTVADVVEALVGAFLVDSGFKAAVAFLTWIGIQVDFKASQVVDICTASAAYIPLSADIDIPSLESKLGHQFFHKGLLLQAFVHPSYNKLGGGCYQRLEFLGDAVLDYLIASYLFSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRSFDKYLLCDSNGLSEAIKKYVEYVRRPSTDSSIKEGPKCPKALGDLVESCVGAILLDSGFNLNKVWKIMTSFLDPIMKFSSSLQLSPIRDLRELCQAHNLELELPSVSLKLTKLFSVEVKVSGDNVSETASATGQNKKEACRIASLKLFSKFK 1443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1816 1443 ProSiteProfiles PAZ domain profile. 868 968 IPR003100 GO:0005515
Pvu3g1816 1443 SMART helicmild6 422 512 IPR001650 -
Pvu3g1816 1443 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 576 666 IPR005034 GO:0016891
Pvu3g1816 1443 Pfam PAZ domain 868 989 IPR003100 GO:0005515
Pvu3g1816 1443 SUPERFAMILY RNase III domain-like 1017 1178 IPR036389 GO:0004525|GO:0006396
Pvu3g1816 1443 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 54 230 IPR014001 -
Pvu3g1816 1443 Gene3D - 385 546 IPR027417 -
Pvu3g1816 1443 Gene3D - 45 282 IPR027417 -
Pvu3g1816 1443 Pfam Dicer dimerisation domain 576 660 - -
Pvu3g1816 1443 Gene3D Ribonuclease III domain 1203 1373 IPR036389 GO:0004525|GO:0006396
Pvu3g1816 1443 PANTHER DICER-RELATED 43 1439 - -
Pvu3g1816 1443 SMART riboneu5 1017 1184 IPR000999 GO:0004525|GO:0006396
Pvu3g1816 1443 SMART riboneu5 1220 1372 IPR000999 GO:0004525|GO:0006396
Pvu3g1816 1443 MobiDBLite consensus disorder prediction 1 21 - -
Pvu3g1816 1443 Pfam Ribonuclease III domain 1240 1349 IPR000999 GO:0004525|GO:0006396
Pvu3g1816 1443 Pfam Ribonuclease III domain 1033 1164 IPR000999 GO:0004525|GO:0006396
Pvu3g1816 1443 ProSitePatterns Ribonuclease III family signature. 1240 1248 IPR000999 GO:0004525|GO:0006396
Pvu3g1816 1443 Gene3D - 1374 1443 - -
Pvu3g1816 1443 SMART DRBM_3 1377 1443 IPR014720 -
Pvu3g1816 1443 CDD DEXHc_dicer 45 243 - -
Pvu3g1816 1443 SUPERFAMILY dsRNA-binding domain-like 1331 1442 - -
Pvu3g1816 1443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 526 IPR027417 -
Pvu3g1816 1443 CDD RIBOc 1221 1371 IPR000999 GO:0004525|GO:0006396
Pvu3g1816 1443 CDD RIBOc 1018 1174 IPR000999 GO:0004525|GO:0006396
Pvu3g1816 1443 Gene3D Dicer dimerisation domain 572 666 IPR038248 -
Pvu3g1816 1443 Gene3D paz domain 863 966 - -
Pvu3g1816 1443 SMART ultradead3 43 245 IPR014001 -
Pvu3g1816 1443 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1376 1443 IPR014720 -
Pvu3g1816 1443 Pfam Helicase conserved C-terminal domain 405 510 IPR001650 -
Pvu3g1816 1443 Gene3D Ribonuclease III domain 1012 1175 IPR036389 GO:0004525|GO:0006396
Pvu3g1816 1443 Pfam Type III restriction enzyme, res subunit 55 212 IPR006935 GO:0003677|GO:0005524|GO:0016787
Pvu3g1816 1443 PANTHER DICER-LIKE PROTEIN 4 43 1439 - -
Pvu3g1816 1443 SMART PAZ_2_a_3 844 994 IPR003100 GO:0005515
Pvu3g1816 1443 SUPERFAMILY PAZ domain 867 966 IPR036085 GO:0005515
Pvu3g1816 1443 ProSiteProfiles Ribonuclease III family domain profile. 982 1164 IPR000999 GO:0004525|GO:0006396
Pvu3g1816 1443 ProSiteProfiles Ribonuclease III family domain profile. 1205 1349 IPR000999 GO:0004525|GO:0006396
Pvu3g1816 1443 SUPERFAMILY RNase III domain-like 1203 1368 IPR036389 GO:0004525|GO:0006396
Pvu3g1816 1443 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 392 561 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1816 Pvu-Chr3 38665167 38680339 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1816 410 509 Eukaryotic Initiation Factors Gene Family AT1G72730 32.000 2.47e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1816 K11592 - gmx:100818702 2497.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1816 3 38665167 38680339 Pvu3g1816 3 38665167 38680339 ECH