Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1802 ATGGGTTCCTCTTCTAGTAGACATGCTTCTCGCCCTTCTGCTTCTTCTACTCACAGGGTCAACCGCTTCAGATTGTCGTCTCTTCTATGTGGCACCTCCACCTCTCGCTCCATTCACCAGATGGAAGAACATTCAGCTGAACTTCAGGTTCATTTAGCAAGAAATTTTGAAGGTGAAATTCATAAAGTCACTGAGGAAACATCTTTATTATGTACAGAAGCTAGAATTAGCTGCAGTCCCCCTGCTGAAACTTCAACCTCATCTGATATGAGAACCGAGTTCCATGGGAATACTAGTGCTGGAAGTTCTTATAGAAACGTTGCAACACATGGTCACAGGAACTGCTTGTCTGAACATGAGGAGCAAGCCCCTCCTTGTCAGGTAAGTGCTGGTCGTAGTGGTCGTGAATCATATAGTGATAGTAGCAACACAGCTAGTACTTCATTTGTAGCACAGCAGTCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAGGATGTAGTTAATGACGTTAATTATCCAGTGGTTAGTGGTGGTGTCTCTCAAGTCTCTCATGAGACAGTGCATCCAAGAAGTTCAACCCCCCGGGAGCATGTGAATTTCAGTTCTGGGGAAATTTCTGTTGAGAATCACAATAGTGCATTCATTTCTATCCAGAATTCTTCCAACCTTGCTCAAGGTTCCAACTTAGCAGCTACTTCTCAAGGGCAAGAAGAAGAACCTTGTCGTGAGACAATACCTTCAGGTTTAGGTATTCTTGTATCCAATCGGGAAAGAGGACCAGGAAATGATAGTGTGCTTCAAGTTGACGTGGTCACAATATCTTCCAATATTTTGTCTGGAAGCAATGCTGATGCTAATGATCATGATGCTAGAAGGAGTGGTAGAAGATTATTTTGGGATGCTTTTTCACGACGTAGTTCTAGAAGGCTTGGTGATTCTCCAACCATTGTCTTCTCTACTGCAGTTGCTGATGATCCTGGATCTCAAGATCGATGGCTTGTTGATTTTGGTGGTGATTTGTCAAATGATGGGGTTGGAGGTGCTTCTGGATATATGGGCAGTAGAATTCACAGATTGAATGAACGAAGAAGGCGGCACTCAAGATCTGAGATCTGGGATAGGCTTCGTGGTGGCTTTGATGAGATTGGTCGATGGAATTCATGTCCACTAGGACTCCATGCAGATGGCATGTGCTCATGCGAGTCTTCCCCAATGGCTGATGAATCAAGCACTCGAGCAAGTATTTCAAGAATAGTCATGCTGGCTGAGGCGTTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCTGGATCACTGTCTCTATCCATGGTCTCACTCCCTGCCCCTGAATCAATTGTTGATTCCTTTCCCCTGAAATCTCACAAAAAGGTTGAAGTGGCTGATGGAGGCAATGATGTTGAACAATGTTACATATGTCTGGCGGAGTACGAAGAAGGGGACCAAATACGAGTTCTTCCTTGCCTCCATGAGTATCACATGTCATGTGTGGACAAGTGGCTTAAAGAAATACACGGTGTATGTCCTCTGTGTCGTGGCAATGTCTGTGGAGGGTTCACAGAGTCTTCTGCCAACTCAGAAGTGCAATCTCATTGA 1620 0.4438 MGSSSSRHASRPSASSTHRVNRFRLSSLLCGTSTSRSIHQMEEHSAELQVHLARNFEGEIHKVTEETSLLCTEARISCSPPAETSTSSDMRTEFHGNTSAGSSYRNVATHGHRNCLSEHEEQAPPCQVSAGRSGRESYSDSSNTASTSFVAQQSSDPVSVNVSANKDVVNDVNYPVVSGGVSQVSHETVHPRSSTPREHVNFSSGEISVENHNSAFISIQNSSNLAQGSNLAATSQGQEEEPCRETIPSGLGILVSNRERGPGNDSVLQVDVVTISSNILSGSNADANDHDARRSGRRLFWDAFSRRSSRRLGDSPTIVFSTAVADDPGSQDRWLVDFGGDLSNDGVGGASGYMGSRIHRLNERRRRHSRSEIWDRLRGGFDEIGRWNSCPLGLHADGMCSCESSPMADESSTRASISRIVMLAEALFEVLDEIHRQPGSLSLSMVSLPAPESIVDSFPLKSHKKVEVADGGNDVEQCYICLAEYEEGDQIRVLPCLHEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTESSANSEVQSH* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1802 539 MobiDBLite consensus disorder prediction 118 156 - -
Pvu3g1802 539 SMART ring_2 478 519 IPR001841 -
Pvu3g1802 539 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 537 - -
Pvu3g1802 539 MobiDBLite consensus disorder prediction 78 106 - -
Pvu3g1802 539 ProSiteProfiles Zinc finger RING-type profile. 478 520 IPR001841 -
Pvu3g1802 539 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 537 - -
Pvu3g1802 539 Pfam Ring finger domain 477 520 IPR001841 -
Pvu3g1802 539 SUPERFAMILY RING/U-box 469 523 - -
Pvu3g1802 539 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 444 524 IPR013083 -
Pvu3g1802 539 MobiDBLite consensus disorder prediction 132 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1802 Pvu-Chr3 38522350 38526296 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1802 348 524 C3H Transcription Factor Family AT5G45290 47.423 2.60e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1802 - - vun:114178267 950.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1802 3 38522350 38526296 Pvu3g1802 3 38522350 38526296 ECH