Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1796 ATGGGAAGTAATGGTACTGAAAAGATCCCAATCAATAACAGTGCTGAAAGTTCAGAAACCACTATTGAAATAAAGATTAAAACATTGGATTCTCAAACGTACACCCTCAGAGTGGATAAACAGATGCCGGTCCCTGCCCTGAAAGAGCAGATTGCTTCTGTAACTGGAGTATTATCTGAACGGCAACGCTTAATTTGCCAAGGAAAAGTTCTAAAGGATGATCAGCTTCTGTCTGCGTATCATGTTGAAGATGGTCACACCTTGCATCTGGTTGTGAGGCAACCTGACCTACCACCACCAGGAAGTCTGCCCAATCATTCAGTGACTGAACCGAATTCAAGCTCGAGCCTCAGTCACAGTAGTCAAGTAGCTCCTGGTGTTTTTATTGAGACTTTCAATGTGCCTTTTCAGGGTGATGGTGTTGCACCTGAAATCAATAGGATCGTTTCTGCTGTTCTAGGATCCATTGGACTTCAAAATTTTGCAAGTGGTGAAGGGATTGATGTCAGGGAGCATGATTCCCAAGGCCCTGGAAGAATTTCAGGCTCTAGTGGGATATTTGATTCGTCTCATCCTCAACCCGAACAATCGGGTTTTCGGATTTTGTCTGATAGATCACGTAATGCCTTTGGAGCTCCAGTGCCAGTATCTCTAGGGTCTTTGCAGCCTCCTGTCATTCCTGATTCTTTGACAACTTTGTCCCAATATTTAAGTCACATAAGCCATGAATTTGATGCAATTGTCAGAGAAGGGGGGGATATTGCCCAAGCAGCTGAGGCTCAGAGGAATGTAGAAACTAGACCTGTTTCTTCACGATCTGGTTCAGCTCCAGAAGGGTTTTCATCTCCAACGTTGTTGGCAGAAGTTTTACTTTCTACAAGACGAATGATTGTTGAACAAGCTGGCGAATGCCTACTTCAACTATCACGGCAGCTAGAGAACCAAGCAGATATAACTGATCCATTGTTGCGGTCAAGCATTCAGTCTAGGGCTTTGAGAACTGGAGTTTTGTTTTATAACCTTGGTGCATTTTTACTTGAGCTTGGTCGCACAACCATGACACTGCGTTTGGGTCAAACACCGACTGAAGCGGTAGTTAATGGTGGGCCTGCAGTTTTTATATCCCCAAATGGTCCTAACCATATCATGGTTCAGCCCCTTCCTTTTCAACCTGGAACAAGCTTTGGCGCTGTCCCTGTGGGAGCTGCACAGTCTAACTCAAGTTTAGGTAGTGGGCTTGGTTCAAGCTTTTTCCCTAGGCGTATAGACATACAGATACGACGAGGTACCTCATCAACATCAACCAATACCAATCAAGAAGAACGCAATGATACACAACCTGCCTCAGTACAAAGAAATCCAGGTGAAAATCCTGTTAATCTGGCAAACTCTAGGCGTTCAGATGCATCTTTTGCTGGGGAACCAGGAGTAAGGTTAGTGCCTATTAGAACCATGGTTGCAGCTGCAGTACCAGGTCCGGTGGTCCGTCCACCCTCGGAATCATCTGGTAATTCTATAGGGCTTTACTATCCAATTCTTGGGAGATTTCAACATGTGTCTTCTGGACATGTAAATAGTGAACAGAGATCTCAACATTCAAGTCAACATAATGCTGCGGTACCATCAACTACTGAATCCATGTTGGAAAGGCAAACCACAGATGATTCTACAAGGAATGGATCCTTATCAACTCCAAGCACAAGACCGGAGCCATCTAATTCTCGTGTTGTAAATATCAATATTCTTGCTGCTAGTGGACCCCAAAACAACCAAGAACCTGAGCGACAAATACCAAGCAGTGTACTTCAGTTATTAAGGTCACTCTTTCCTGGTGGAGAAATTCATGTGGAAGATTCAAGTGTACAAGGAATAGCTGCTGGCTCTACCTCAGATCATGCTGCAACATCAACGGGTGCTGCCCAAGTCCCTGAAGCACAACCTAATGTCAGTGAAGAAGGAATATTTTTGTCAAATATGCTCCGTGAAATCATGCCAGTCATATCTCAACAAGTAGGGTCAGAGGAGGGAATTCCTTCAGAAGATCACATGGCTCAAGATTCTTCAACCCAGGTTGAAACTGATGTTGGGACATCACGCAGACCGGGTGATTCTGACTCAAGCCCACCAAATCCAAAACGTCAAAAGATGGAATGA 2154 0.4443 MGSNGTEKIPINNSAESSETTIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASVTGVLSERQRLICQGKVLKDDQLLSAYHVEDGHTLHLVVRQPDLPPPGSLPNHSVTEPNSSSSLSHSSQVAPGVFIETFNVPFQGDGVAPEINRIVSAVLGSIGLQNFASGEGIDVREHDSQGPGRISGSSGIFDSSHPQPEQSGFRILSDRSRNAFGAPVPVSLGSLQPPVIPDSLTTLSQYLSHISHEFDAIVREGGDIAQAAEAQRNVETRPVSSRSGSAPEGFSSPTLLAEVLLSTRRMIVEQAGECLLQLSRQLENQADITDPLLRSSIQSRALRTGVLFYNLGAFLLELGRTTMTLRLGQTPTEAVVNGGPAVFISPNGPNHIMVQPLPFQPGTSFGAVPVGAAQSNSSLGSGLGSSFFPRRIDIQIRRGTSSTSTNTNQEERNDTQPASVQRNPGENPVNLANSRRSDASFAGEPGVRLVPIRTMVAAAVPGPVVRPPSESSGNSIGLYYPILGRFQHVSSGHVNSEQRSQHSSQHNAAVPSTTESMLERQTTDDSTRNGSLSTPSTRPEPSNSRVVNINILAASGPQNNQEPERQIPSSVLQLLRSLFPGGEIHVEDSSVQGIAAGSTSDHAATSTGAAQVPEAQPNVSEEGIFLSNMLREIMPVISQQVGSEEGIPSEDHMAQDSSTQVETDVGTSRRPGDSDSSPPNPKRQKME* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1796 717 Gene3D - 14 109 - -
Pvu3g1796 717 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 1 717 - -
Pvu3g1796 717 MobiDBLite consensus disorder prediction 522 575 - -
Pvu3g1796 717 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
Pvu3g1796 717 MobiDBLite consensus disorder prediction 263 280 - -
Pvu3g1796 717 MobiDBLite consensus disorder prediction 625 647 - -
Pvu3g1796 717 MobiDBLite consensus disorder prediction 168 204 - -
Pvu3g1796 717 MobiDBLite consensus disorder prediction 93 120 - -
Pvu3g1796 717 MobiDBLite consensus disorder prediction 682 709 - -
Pvu3g1796 717 MobiDBLite consensus disorder prediction 625 644 - -
Pvu3g1796 717 MobiDBLite consensus disorder prediction 427 472 - -
Pvu3g1796 717 MobiDBLite consensus disorder prediction 259 280 - -
Pvu3g1796 717 MobiDBLite consensus disorder prediction 427 467 - -
Pvu3g1796 717 Pfam Ubiquitin family 24 94 IPR000626 GO:0005515
Pvu3g1796 717 MobiDBLite consensus disorder prediction 669 717 - -
Pvu3g1796 717 PANTHER SCYTHE PROTEIN UBIQUITIN-LIKE DOMAIN PROTEIN 1 717 - -
Pvu3g1796 717 SMART ubq_7 22 93 IPR000626 GO:0005515
Pvu3g1796 717 PRINTS Ubiquitin signature 32 52 IPR019956 -
Pvu3g1796 717 PRINTS Ubiquitin signature 53 73 IPR019956 -
Pvu3g1796 717 PRINTS Ubiquitin signature 74 95 IPR019956 -
Pvu3g1796 717 MobiDBLite consensus disorder prediction 106 120 - -
Pvu3g1796 717 SUPERFAMILY Ubiquitin-like 17 102 IPR029071 -
Pvu3g1796 717 MobiDBLite consensus disorder prediction 177 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1796 Pvu-Chr3 38466680 38475439 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1796 22 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.500 7.50e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1796 K23390 - gmx:100783070 1154.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1796 3 38466680 38475439 Pvu3g1796 3 38466680 38475439 ECH