Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1784 ATGAGAAAGAAAATGAAGCAAATAGGAGAAATAAGGGAGGATAGTAAAATGGGAGATAGCAGCCCCAAAGCATATGATAATGATACTATGGTGTTTATATCCATGTCTCAAGAATTGAAGAATGAGGGGAACGAGCTGTTCCAAAAGAGGGATCTAGAAGGAGCTATACTCAAATATGAGAAAGCCCTCAAGTTACTTCCGGGAAATCATATTGATGTGTCCTATCTGCGGAGCAACATGGCTGCATGTTATATGCAGAAGGGGGTCAGTGAGTTCCCAAGGGCTATTCATGAGTGTGATTTGGCTCTTGAAGTGACACCCAAATATGGTAAAGCACTGTTGAAGAGAGCAAGGTGCTATGAGGCTTTAAATAGGCTGGATTTAGCTCTAAGAGATGTCAATACTGTTCTGAAGATGGAACCAAATAATGTCATGGCATTAGAGATCTCAGAAAAAGTGAAAAATGCACTTGAGGAGAAAGGATTGAGAGTTAATGATACAGTAATTGAGTTGCCTCCAGATTATGTCGAACCTCCTAGTGCTTTGACTCCAGAAAAGGTAGTGAAAGAGAAAATGCGCAAGAAGAAGGGCTATAAAGAGGAAAAGAAGGCTCCTGATGACAAAATTCTAGAAAGGCAAACCGAGGAGAAATCTGAGGAGAAGGCTGAGGGCAGTATTGTGGTCGTTGAGAAGAAGATCAAGGGATCCAAGAAGAAGAAGGCCAAGGAAAAAATTGATGAGAAGAAGGCTGATATAAAGGAAGTTATAGAGGAAAGAAGTAATGGTAGAAGGGAACACGTTGCTAACAAAACAGTTAAACTTATTTTTGGTGATGATATAAGATGTGCTGAACTGCCTATCAATTATAGCCTCTTCCAGTTAAGAGAAGTTATTCAAGACCGATTTTCGAGCCTAGGAGCTGTTCTAGTCAAATACAGGGACCAAGAAGGTGATTTAGTCACAATCACTTCTGATGATGAATTAAGATGGGCTGAAACAGGATCTCATAGTTCTATACGACTGTACATAGTAGAAGCCACTCCTGAGCAGGATCCACTTTTTGAGAAATTTAAAGTGAAGGAGGCGGAAGTGGTTGGCATTAACATTGCACATGAGAATGGTTGTGTGGGAAAAGCAAATGGAATTGTTAGGTCTTCTTGCATTGAGGATTGGATAATTCAGTTTGCCAAATTGTTCAAGAACCTAGTTGGTTTTGAATCTGACATATATTTGGATTTTCACGAACATGGTATGAAGCTCTATTCCGAGGCTCTGGAGGAGACTGTTACAAGCGAAGAAGCACAAGGCCTATTTGACATGGCAGGAGATAAGTTCCAAGAGATGACTGCCCTTGCATTGTTCAACTGGGGAAATGTGCATATGTCTAAGGCAAGGAAAAAGGTATATAAAACAGAAGACTCTTCTAAAGAGCATCTATGCGAACTGATAAAAAGTTCATATGAATGGGCACTGGAAGAGTATTTAAAGGCAGGAGAAAAATATGATTCGGCCATTAAAATGAAGTCAGATTTTCACGAAGGCTTCTTGGCGCTGGGGCTGCAGCAGTTTGAGCAAGCAAAACTTTCGTGGTATCATGCACTCAGTAGTAATGCAGACTTATTAACATGGCCTTCCGCTGAGGTTCTTCATCTTTACAACAATGCTGAAGAAAATATTGAGAGAGGAATGCAGATATGGGAAGAATCTGAAAAGCAGAACTTGAGTAAAACGTCTAATTCAAACTGTGCTATATTGGATTTGCAGAACATGGGGTTGGATGGGCTTTTTAAAACTATGTCCTTAGATGAACTTGCAGTACAGGAGGCACATATGAGGTCTCAAATAAATCTCCTATGGGGTACCATTCTATATGAACGCTCAATTGTGGAGTTCAAATCAGGGCTACCTATGTGGCATGAAACTCTTGCGGTTTCAGTTGAGAAATTTGAATTTGCAGGAGCTTCTCCAACAGATATAGCTGTAATTTTGAAGAACCACTGTTCAAATAAGACTGCAGTAGATGGTCTTGCCTTCAAAATTGATGAAATAGTACAGGCATGGAATGAGATGTACAAAGCTAAAATGTGGAAGAGTGGAGTTCTATCATTTCGTTTGGAACCCTTATTTAGAAGGCGAGTTTCAAAAACTGATCATGCCTTTGAGCTTGCATGA 2172 0.4006 MRKKMKQIGEIREDSKMGDSSPKAYDNDTMVFISMSQELKNEGNELFQKRDLEGAILKYEKALKLLPGNHIDVSYLRSNMAACYMQKGVSEFPRAIHECDLALEVTPKYGKALLKRARCYEALNRLDLALRDVNTVLKMEPNNVMALEISEKVKNALEEKGLRVNDTVIELPPDYVEPPSALTPEKVVKEKMRKKKGYKEEKKAPDDKILERQTEEKSEEKAEGSIVVVEKKIKGSKKKKAKEKIDEKKADIKEVIEERSNGRREHVANKTVKLIFGDDIRCAELPINYSLFQLREVIQDRFSSLGAVLVKYRDQEGDLVTITSDDELRWAETGSHSSIRLYIVEATPEQDPLFEKFKVKEAEVVGINIAHENGCVGKANGIVRSSCIEDWIIQFAKLFKNLVGFESDIYLDFHEHGMKLYSEALEETVTSEEAQGLFDMAGDKFQEMTALALFNWGNVHMSKARKKVYKTEDSSKEHLCELIKSSYEWALEEYLKAGEKYDSAIKMKSDFHEGFLALGLQQFEQAKLSWYHALSSNADLLTWPSAEVLHLYNNAEENIERGMQIWEESEKQNLSKTSNSNCAILDLQNMGLDGLFKTMSLDELAVQEAHMRSQINLLWGTILYERSIVEFKSGLPMWHETLAVSVEKFEFAGASPTDIAVILKNHCSNKTAVDGLAFKIDEIVQAWNEMYKAKMWKSGVLSFRLEPLFRRRVSKTDHAFELA* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1784 723 CDD PB1 271 343 - -
Pvu3g1784 723 ProSiteProfiles TPR repeat profile. 110 143 IPR019734 GO:0005515
Pvu3g1784 723 SUPERFAMILY CAD & PB1 domains 268 355 - -
Pvu3g1784 723 PANTHER PROTEIN PHOX3 9 722 - -
Pvu3g1784 723 Coils Coil 238 265 - -
Pvu3g1784 723 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Pvu3g1784 723 Gene3D Tetratricopeptide repeat domain 34 165 IPR011990 GO:0005515
Pvu3g1784 723 Pfam PB1 domain 271 344 IPR000270 GO:0005515
Pvu3g1784 723 Gene3D - 268 349 - -
Pvu3g1784 723 MobiDBLite consensus disorder prediction 189 216 - -
Pvu3g1784 723 SMART tpr_5 36 69 IPR019734 GO:0005515
Pvu3g1784 723 SMART tpr_5 110 143 IPR019734 GO:0005515
Pvu3g1784 723 SMART tpr_5 74 109 IPR019734 GO:0005515
Pvu3g1784 723 MobiDBLite consensus disorder prediction 1 21 - -
Pvu3g1784 723 SMART PB1_new 269 346 IPR000270 GO:0005515
Pvu3g1784 723 ProSiteProfiles PB1 domain profile. 269 346 IPR000270 GO:0005515
Pvu3g1784 723 SUPERFAMILY TPR-like 36 149 IPR011990 GO:0005515
Pvu3g1784 723 PANTHER PROTEIN CLMP1 9 722 IPR044517 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1784 Pvu-Chr3 38344366 38348394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1784 19 143 Calmodulin-binding Proteins AT3G25230 30.216 4.83e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1784 - - gmx:100807387 1176.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1784 3 38344366 38348394 Pvu3g1784 3 38344366 38348394 ECH
Pvu3g1784 3 38344366 38348394 Pvu9g2189 9 31430120 31439096 PCT