Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1762 ATGTTTCAGCCTTTCTTCCATTTCTTTACGCTTGTTTCGGTCAAACTCTCATGCTTCACACTTCACTACCCAACTTTTAACACTCGCACTTCCCTCCAATTCCCTGCCATGAACCGCCCCCATAATGGAGACACTGAAACTCTCCTTCGTCAAGCTCTGCTGTCTTCTTCCCAGAGATCCATCATCAACTCCACGTCCCAGGTTGCTATTGTCGGCGTCAATGTCAGCCCAATTGAGAGCCTCGATTATGAGATTTTTGAGAACGAGTTCTTCAAGCAGGATTGGAGGAGCAGAGGGAAGGCTCAGATATTTCAGTACATTATTATGAAGTGGCTCTTGTGCTTTCTCGTTGGCGTGATCGTTAGCCTTGTTGGCTTCTGCAACAATCTCGCGGTTGAGAATCTCGCTGGCGTCAAGTTTGTGGTCACCTCCAATATGATGTTGGAGAAGAGGTTTCAGTTGGCCTTCTTTATATTTTTTGTTTCTAATTTGAGTCTCACGCTTTTTGCCTCCTTAATCACGGCTTTGATAGCACCTGCAGCCACTGGTTCAGGTATACCTGAGGTGAAGGCTTACCTAAATGGTGTGGACGCACCTGGAATATTTACTGTGCGAACTCTTTTTGTTAAGATTATTGGAAGCATTACAGCAGTTTCTTCGTCACTTCTGATCGGGAAGGCAGGGCCGATGGTGCATACAGGTGCATGTGTAGCAGCATTGTTAGGTCAGGGTGGGTCGAAGAGATACAGGTTAACGTGGAAATGGTTACAGTTTTTTAAGAATGACCGGGATCGGAGAGATCTAATAACATGTGGATCAGCGGCTGGAATGGCTGCTGCCTTCCGGGCCCCTGTTGGTGGTGTGTTGTTTGCTCTAGAAGAGATGGCATCTTGGTGGAGAAGTGCCCTTCTGTGGAGAGCTTTCTTCACAGCAGCAATAGTTGCAATTTTGCTTCGTGCCATGATTGACCTATGTTTAAGTGGTAAATGTGGGCTATTTGGTAAAGGGGGACTGATAATGTTTGATGCTTATTCAGCAAGTATTTCATATCATTTGGTGGATCTTCCTCCAGTGTTTATTCTTGGTGTTATAGGGGGGATACTTGGCAGCTTATTTAATTTGCTGTTGAGCAAAGTTCTTCGAATATACAATTTTATCAATGAGAAAGGAACCATTTATAAAATTTTGCTTGCTTGTGTACTCTCCATTTTTACATCCTGCCTTCTTTTTGGTTTGCCATGGTTTACATCTTGCCGACCTTGTCCACCTAATCCAACTGAACCTTGTCCTACTATAGGCCGGTCTGGTATCTACAAGAAGTTCCAATGCCCTCCTAATCAATACAATGATCTTGCAAGCCTTATTTTCAACACAAATGATGATGCTATTAGGAATCTATTTAGCAAGAATACTGATGACGAGTTTGAGTTTACATCAATGTTAATCTTTTTCATTACATGCTTTCTTCTAAGTATCTTTAGCTATGGAGTTGTTGCTCCCGCTGGTCTTTTTGTGCCAGTTATTGTTACTGGTGCATCTTATGGACGTGTTGTTGGAATGCTGCTTGGCAAAAACTCCAATCTTAACCATGGTCTTTTTGCTGTACTTGGTGCTGCTTCCTTTCTTGGTGGATCCATGAGGACAACAGTTTCTCTGTGTGTAATTATTCTAGAACTAACCAACAACCTGTTATTGCTGCCCCTAATCATGATGGTGCTATTCATATCTAAGACTGTCGCAGATGCTTTCAACGGAAATATATATGACATTATAATGAAAGCGAAGGGTTTGCCTTATTTAGAAACTCATGCTGAACCTTATATGAGGCAGCTAACCGTAGGTGATGTAGTAACAGGCCCACTGCAGACATTAAATGGCATCGAAAAGGTTCGTAACATAGTGTTTATTCTCAAAACTACTGGACATAACGGTTTTCCTGTTATTGACGAGCCTCCTATGTCGGAAGCTCCGGTGTTATTTGGCATAATCCTTCGTGATCATCTTCTCACGTTGTTGAAGAATAAAGTTTTTATATCCTCACCTTCAGCAACCACTGGCAATGTCCTCAACAAGTTTTCAGCCGATGATTTTGCAAAGAAGGGTTCAAGCAAAGTTCGTCTAAAGATAGAAGATATACAGTTATTGGAGGAAGAGATGGACATGTTCATAGATCTACATCCATTTACTAATGCTTCTCCTTATACTGTTGTGGAGACAATGTCCCTGGGAAAGGCCCTTACACTTTTTCGAGAGCTTGGTTTAAGGCATCTGCTTGTGATACCCAAGATTTCTAGTAGATCACCTGTGGTTGGTATACTCACTCGGCACGATTTCATGCCAGAACATATTTTGGGTTTGCATCCCCTTCTGGCAAGAAACACAGGGAAAATATTAAGATTTTAG 2403 0.4228 MFQPFFHFFTLVSVKLSCFTLHYPTFNTRTSLQFPAMNRPHNGDTETLLRQALLSSSQRSIINSTSQVAIVGVNVSPIESLDYEIFENEFFKQDWRSRGKAQIFQYIIMKWLLCFLVGVIVSLVGFCNNLAVENLAGVKFVVTSNMMLEKRFQLAFFIFFVSNLSLTLFASLITALIAPAATGSGIPEVKAYLNGVDAPGIFTVRTLFVKIIGSITAVSSSLLIGKAGPMVHTGACVAALLGQGGSKRYRLTWKWLQFFKNDRDRRDLITCGSAAGMAAAFRAPVGGVLFALEEMASWWRSALLWRAFFTAAIVAILLRAMIDLCLSGKCGLFGKGGLIMFDAYSASISYHLVDLPPVFILGVIGGILGSLFNLLLSKVLRIYNFINEKGTIYKILLACVLSIFTSCLLFGLPWFTSCRPCPPNPTEPCPTIGRSGIYKKFQCPPNQYNDLASLIFNTNDDAIRNLFSKNTDDEFEFTSMLIFFITCFLLSIFSYGVVAPAGLFVPVIVTGASYGRVVGMLLGKNSNLNHGLFAVLGAASFLGGSMRTTVSLCVIILELTNNLLLLPLIMMVLFISKTVADAFNGNIYDIIMKAKGLPYLETHAEPYMRQLTVGDVVTGPLQTLNGIEKVRNIVFILKTTGHNGFPVIDEPPMSEAPVLFGIILRDHLLTLLKNKVFISSPSATTGNVLNKFSADDFAKKGSSKVRLKIEDIQLLEEEMDMFIDLHPFTNASPYTVVETMSLGKALTLFRELGLRHLLVIPKISSRSPVVGILTRHDFMPEHILGLHPLLARNTGKILRF* 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1762 800 CDD CBS_pair_voltage-gated_CLC_euk_bac 603 781 - -
Pvu3g1762 800 Pfam Voltage gated chloride channel 167 581 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu3g1762 800 Gene3D - 601 781 IPR046342 -
Pvu3g1762 800 Pfam CBS domain 732 778 IPR000644 -
Pvu3g1762 800 ProSiteProfiles CBS domain profile. 728 789 IPR000644 -
Pvu3g1762 800 PANTHER CHLORIDE CHANNEL PROTEIN 47 794 - -
Pvu3g1762 800 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 47 794 - -
Pvu3g1762 800 PRINTS Chloride channel signature 179 196 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu3g1762 800 PRINTS Chloride channel signature 210 229 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu3g1762 800 PRINTS Chloride channel signature 274 293 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu3g1762 800 PRINTS Chloride channel signature 499 519 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu3g1762 800 PRINTS Chloride channel signature 531 547 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu3g1762 800 PRINTS Chloride channel signature 549 568 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu3g1762 800 PRINTS Chloride channel signature 587 601 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pvu3g1762 800 SMART cbs_1 620 673 IPR000644 -
Pvu3g1762 800 SMART cbs_1 732 783 IPR000644 -
Pvu3g1762 800 SUPERFAMILY Clc chloride channel 88 602 IPR014743 -
Pvu3g1762 800 Gene3D Clc chloride channel 102 600 - -
Pvu3g1762 800 SUPERFAMILY CBS-domain pair 603 779 IPR046342 -
Pvu3g1762 800 PRINTS Plant CLC chloride channel signature 84 92 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pvu3g1762 800 PRINTS Plant CLC chloride channel signature 295 303 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pvu3g1762 800 PRINTS Plant CLC chloride channel signature 309 319 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pvu3g1762 800 PRINTS Plant CLC chloride channel signature 327 334 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pvu3g1762 800 PRINTS Plant CLC chloride channel signature 451 467 IPR002251 GO:0005247|GO:0006821|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1762 Pvu-Chr3 38111149 38117714 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1762 42 799 Ion Channels AT5G33280 75.066 0.0 1139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1762 K05016 - gmx:100817901 1302.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1762 3 38111149 38117714 Pvu3g1762 3 38111149 38117714 ECH