Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1720 ATGACAAGCTGCGGCATCGATGTTGCGCCTGAGCAACTCTGTTACATCCCCTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGCAGCCTGTTTGACATTGTGACCGTTCGATGCGGGCACTGCACCAATCTATGGTCCGTGAACATGGCCGCCGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGGGACCTGGGCACTGCAACCCAGAGTACAGGATTGACACTGGCTCCACCTCCAAATGCAACAACAGGATTGCAATGCGTGCACCCACCACTAATGTATCTGAGGAAAGGGTTGTGAATAGGCCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAATCAGTTTATAAAGGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACAGAGAAGCGTTCAGTACAGCTGCAAAAAACTGGGCACATTTTCCCCATATTCACTTTGGGCTGATGCTGGACAGCAACAACCAAGCTAAGATGGAAAATGTTTCTGAGAAGCATTTAATGTCAAGGGCTGCGCTAATGAATAAATGA 561 0.4795 MTSCGIDVAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQGPGHCNPEYRIDTGSTSKCNNRIAMRAPTTNVSEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLDSNNQAKMENVSEKHLMSRAALMNK* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1720 186 PANTHER PROTEIN YABBY 6-RELATED 1 176 IPR006780 GO:0007275
Pvu3g1720 186 PANTHER AXIAL REGULATOR YABBY 5 1 176 - -
Pvu3g1720 186 Pfam YABBY protein 9 159 IPR006780 GO:0007275
Pvu3g1720 186 SUPERFAMILY HMG-box 103 152 IPR036910 -
Pvu3g1720 186 Gene3D High mobility group box domain 97 178 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1720 Pvu-Chr3 37492965 37496762 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1720 8 169 C2C2-YABBY Transcription Factor Family AT2G26580 76.543 3.34e-91 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pvu3g1720 YABBY 2.4e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1720 K25796 - gmx:100804731 377.096