Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1709 ATGGTACAAACAAAGAAGTTCAGAGGTGTCAGGCAGCGCCATTGGGGTTCATGGGTATCCGAAATTCGCCACCCACTTCTTAAGAGAAGGGTGTGGCTCGGGACGTTTGAAACAGCAGAAGAAGCTGCTAGAGCCTACGATCAAGCTGCTATTCTGATGAGTGGTAGAAATGCCAAAACAAATTTCCCAATAACTCAAACCCCTGAAGGTGATCCAAAGAGCATTATCAGTGAGGACAGCCCCTCCTCCACCTCCAAGGATCTGGAGGAAATCCTGCATGCTAAGCTTCGAAAATGTGGTAAGGTGCCTTCACCTTCTATGACCTGTTTGAGGCTTGACACAGAGAACTCCCACATCGGAGTGTGGCAAAAGCGCGCTGGGAGACGTTCGGATTCAAATTGGGTCATGACAGTTCAGCTGGAAAACAAGAGTGCCAACAAGGAGACTCATCAAGCTGATAGAAACACTTCTCTTTCTCTACCTTCTTCTGATCATCACCACCACCATGAGCCTCCATCCGGTGTGACAGGTCATCACCATCATCAAGAAGTGGTGAGAGGAGAGATTGATGAAGAAGAGAGAATAGCCCTTCAGATGATAGAGGAACTCCTCAACGACAGAAACTGCCCTAGTCCTTCATTCAACAACATTCAAGAAAGGGATGGTGCCGATGATGACACCTTTTTACTTTAA 693 0.4719 MVQTKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSIISEDSPSSTSKDLEEILHAKLRKCGKVPSPSMTCLRLDTENSHIGVWQKRAGRRSDSNWVMTVQLENKSANKETHQADRNTSLSLPSSDHHHHHEPPSGVTGHHHHQEVVRGEIDEEERIALQMIEELLNDRNCPSPSFNNIQERDGADDDTFLL* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1709 230 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Pvu3g1709 230 MobiDBLite consensus disorder prediction 206 230 - -
Pvu3g1709 230 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Pvu3g1709 230 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Pvu3g1709 230 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Pvu3g1709 230 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Pvu3g1709 230 MobiDBLite consensus disorder prediction 160 184 - -
Pvu3g1709 230 MobiDBLite consensus disorder prediction 143 159 - -
Pvu3g1709 230 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Pvu3g1709 230 MobiDBLite consensus disorder prediction 143 184 - -
Pvu3g1709 230 MobiDBLite consensus disorder prediction 61 84 - -
Pvu3g1709 230 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Pvu3g1709 230 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 216 - -
Pvu3g1709 230 MobiDBLite consensus disorder prediction 61 82 - -
Pvu3g1709 230 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 216 - -
Pvu3g1709 230 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1709 Pvu-Chr3 37339186 37340346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1709 1 205 AP2-EREBP Transcription Factor Family AT1G15360 61.137 2.91e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu3g1709 AP2 9.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1709 - - gmx:100814893 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1709 3 37339186 37340346 Pvu9g0960 9 14411949 14413203 ECH
Pvu3g1709 3 37339186 37340346 Pvu3g1709 3 37339186 37340346 ECH
Pvu3g1709 3 37339186 37340346 Pvu9g2033 9 29159605 29160767 PCT