Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1690 ATGGACGAAGATTCCCTCAAACGCAATACCGATTGTGTTTATTTCTTGGCGTCTCCCCTCACTTGCAAGAAGGGGGCTGAATGTGAGTATCGGCACAATGAGATTGCCAGGCTTAACCCTAGGGATTGCTGGTACTGGGTATCTGGTGAATGCCTTAACCCAACGTGTGCTTTTAGACACCCTCCTCTGGATGGGCACACTGGAGTGCCAGCACCTCCTGAACCTACACAAAATTCATTGCCTGCAAACAAGACAATGGTACCGTGTTATTTTTTCTTCAATGGATTTTGCAACAAAGGTGACAAATGCTCTTTTTTGCATGGGTCTGATGATAGCATTTTTACTGGAAAACCTGTGAAGAATGATAACGGAAGCACCGACGTACACAATCTAGAAAATAAATCATCAGGAAATGGAACTGGTGTAGCGTCAGTACCAACTCACCAATCTTTAACTGCTCCAAAGCATTTGTCTGACTTTAAGCTTCAGCCCAAGGAAGATCATCAGTTACAGTTAACCAAAAATGTCAAGCAGCAAGGCGATTCCTTAGTGATATCTGCTTCAGAATATAAAGAAGCTGCAGTGAGTGGGTCAGACTCTCCGTTTCCAGATGATGGATTTGTTCATAATATGTCTCATTTACGCACTGAGCAGGGTTCGGAAGAGCAAGTAAATAGTCAAATTGAGCCTGAGGAGCGGTGGGAATCATCCCCTCATTCCCCTGGATTTGACGTTCTTGTTCACGATGAATTGGAGAACATCGGTTACGAGGAAGATTCTGAATATTTACCAGTGCTCGATAGGAATGAGCAAGAGCTGAATGAACAGTACCTGGGGCATGAATTTAAGGATCCAATTGAGTATGATACTATGTGCCCAGAAGCGGATATTCTGTATCCACAAGAAACATATGATGGTTACAGATGTTTTGATAGAGACCTTGCTCATGCTAATGGCAGAACAGTTCGTACTTATTCCAGAGATATATTCTTAGATTCTATATTCTCCAGAAAAAGGATTCGGATGTCAGCTGAGGTGGCTGCTTATGACAGTAATTTAGATCTACGTGACCATCTGAGGAGACGTAGAGAAAATAATGGGCCTCCCAGAAGACAAGAATCGTCTTCTTTGATGATTCGAAACCAGGAAAGGCATCAGAGGCCTGGCATTGAGCAGCGGCCAAGTGGAAGACTGACATCGCAACTGGGATATAGTGCTATAGATTCGATTGGAGAGGTTGAAACTCTTTCAATCGCTAACAAGCACGGGTTATTCAGGCGTTCCCAGCAACATAGACCACGGAAGCATTATAGAGAAAAACCCGTCAGACGACCATTTCTGTCATCTAAAATATCCAGGAAACCAGTTTCTAAACAAAGGGGATTTATTCAAGAATCCACTACATTTTCAGCACCTAAGTCTCTTGCAGAAATTAAAGAAGAGAAGAAGAAGGCTGAGGAAGGTTTACATTGGAAAAGCACATCAACTGATTTCCAGGATCCCAAACCTCTGAGTGAAATTCTCAAGGACAAAAGGACCTTGGATTAG 1548 0.4296 MDEDSLKRNTDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWVSGECLNPTCAFRHPPLDGHTGVPAPPEPTQNSLPANKTMVPCYFFFNGFCNKGDKCSFLHGSDDSIFTGKPVKNDNGSTDVHNLENKSSGNGTGVASVPTHQSLTAPKHLSDFKLQPKEDHQLQLTKNVKQQGDSLVISASEYKEAAVSGSDSPFPDDGFVHNMSHLRTEQGSEEQVNSQIEPEERWESSPHSPGFDVLVHDELENIGYEEDSEYLPVLDRNEQELNEQYLGHEFKDPIEYDTMCPEADILYPQETYDGYRCFDRDLAHANGRTVRTYSRDIFLDSIFSRKRIRMSAEVAAYDSNLDLRDHLRRRRENNGPPRRQESSSLMIRNQERHQRPGIEQRPSGRLTSQLGYSAIDSIGEVETLSIANKHGLFRRSQQHRPRKHYREKPVRRPFLSSKISRKPVSKQRGFIQESTTFSAPKSLAEIKEEKKKAEEGLHWKSTSTDFQDPKPLSEILKDKRTLD* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1690 515 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 512 - -
Pvu3g1690 515 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Pvu3g1690 515 Pfam Zinc-finger containing family 7 63 IPR041686 -
Pvu3g1690 515 MobiDBLite consensus disorder prediction 359 397 - -
Pvu3g1690 515 MobiDBLite consensus disorder prediction 118 146 - -
Pvu3g1690 515 MobiDBLite consensus disorder prediction 377 391 - -
Pvu3g1690 515 MobiDBLite consensus disorder prediction 475 493 - -
Pvu3g1690 515 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Pvu3g1690 515 Gene3D - 2 63 - -
Pvu3g1690 515 Gene3D - 75 141 - -
Pvu3g1690 515 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE 1 512 - -
Pvu3g1690 515 SUPERFAMILY CCCH zinc finger 83 108 IPR036855 GO:0046872
Pvu3g1690 515 MobiDBLite consensus disorder prediction 473 515 - -
Pvu3g1690 515 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 108 IPR000571 GO:0046872
Pvu3g1690 515 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Pvu3g1690 515 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Pvu3g1690 515 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Pvu3g1690 515 SMART c3hfinal6 39 62 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1690 Pvu-Chr3 37111073 37113926 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu3g1690 zf-CCCH_3 2.3e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1690 - - gmx:100792282 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1690 3 37111073 37113926 Pvu3g1690 3 37111073 37113926 ECH