Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1666 ATGAAGGGGGAAGTACAGCTTCAGCCTCCACCGGTTATGCAAAACCCTAGTGATTCGGACCCTTTGCTCCTTAACCAGGAGGAGGACGATGAGTCGCCGGGAAGCTCTGGTGAGATCAAGGATGACGAAGAAGACGTTGAGGCAGGCTTACTCCCCTGTTGTCGAATTTGCCTCGAAAGCGATTCTGACCCAGAGGATGAATTGATATCTCCATGCATGTGCAAAGGTACTCAACAGTTTGTTCATCGCTCATGTCTTGATCATTGGCGCTCTGTAAAGGAAGGATTTGCCTTCTCACACTGCACCACCTGCAAAGCCCAATTTCATCTTAGAGTTGAATTATTTGAGGACAACTCTTGGCGTAAAATAAAGTTCAGGCTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTCTGGCTGTACAGACTGTGATTGCAGCTATTGGTGGCTTTGCGTACATCATGGACAAAGATGGTTCCTTCAGGAACTCATTTGATGATGGCTGGGATAAGATACTGTCAAGGCATCCAATTCCGTTTTATTATTGTATTGGAGTGCTGGCCTTCTTTGTACTGATTGGGTTTTTCGGTCTCATACTGCACTGCTCCTCCCTCAATACCAATGACCCCAGAATGGCTGGTTGTCAGAACTGTTGTTATGGATGGGGCATTCTGGATTGCTTTCCCGCTTCCATGGAGGCATGCTTTGCCCTTGTGGTTGTTTTCGTTGTCATCTTTGCAATTCTTGGTATAGCGTATGGTTTTCTTGCTGCCACCATGGCCATTCAAAGAATTTGGCAGAGGCACTACCATATCCTCACCAAGAGGGAGCTTACAAAGGAATACATAGTAGAGGATCTTCGTGGCTGTTATTTCCCACCAAAGTTGGACCCAGAACATGAAGGCCGCTTGAAAATGCTCAAGCTTTTGTGA 930 0.4613 MKGEVQLQPPPVMQNPSDSDPLLLNQEEDDESPGSSGEIKDDEEDVEAGLLPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVELFEDNSWRKIKFRLFVARDVFLVFLAVQTVIAAIGGFAYIMDKDGSFRNSFDDGWDKILSRHPIPFYYCIGVLAFFVLIGFFGLILHCSSLNTNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYIVEDLRGCYFPPKLDPEHEGRLKMLKLL* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1666 309 CDD RING_CH-C4HC3_MARCH 54 105 - -
Pvu3g1666 309 Pfam RING-variant domain 54 104 IPR011016 GO:0008270
Pvu3g1666 309 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 309 - -
Pvu3g1666 309 MobiDBLite consensus disorder prediction 23 43 - -
Pvu3g1666 309 ProSiteProfiles Zinc finger RING-CH-type profile. 46 111 IPR011016 GO:0008270
Pvu3g1666 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 118 IPR013083 -
Pvu3g1666 309 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 309 - -
Pvu3g1666 309 MobiDBLite consensus disorder prediction 1 43 - -
Pvu3g1666 309 SMART ringv_2 53 105 IPR011016 GO:0008270
Pvu3g1666 309 SUPERFAMILY RING/U-box 52 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1666 Pvu-Chr3 36816305 36825254 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1666 1 309 C3H Transcription Factor Family AT1G11020 78.505 7.74e-170 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1666 - - gmx:100818950 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1666 3 36816305 36825254 Pvu3g1666 3 36816305 36825254 ECH