Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1658 ATGACGATAGACGACGATAGCTCTATATATGTTGGGGGTCTCCCTTACGACATCACCGAGGAAACCATTCGCACTGTCTTCAATTTGTATGGTGCCATTCTCGATGTGAAGATTATCAACGACCAACGCAGTAGGGGGAAGTGCTATTGTTTTGTTACTTTCACAAATCCTAGGTCAGCAATCGACGCCATCAACGACATGAATGGCAGAACCATTGACGGTCGTGTGGTTAAAGTTAATGGGGTGAGGTCTCGTGGGGGCAGGCCAAACTTTGGCAGAGAACGGTATTATTATCATAATGATGAGAGGAATGGAGACTGGGATCGTGGGAGAGACCGAGACCGAGATTATGATCATGATAATAGTGGTAGGGATGGATACAGGAATCGGAGCAATGATTGGAATCGAGACCGTGATAGGTCTCGAGACCGAGACCAGGACAGGGATAGAAGATTTGAGCATATGCATGATTATGATCAAGATAGAGATCCTATGTTAGACAATGACTGGAGTAGAGAGGATGATAGAGCTGAAGATGAAGAAGAACATAGGGGGGATGATGGAGATGTGGATAGAGACCACAACTTGGATTTTATTGCAGACAGGAAAACGGATGGGACAAGTGACCTTGATAGAAGTTTTGATGAAGATAGAAAAGATCAGTCAAGGAGAAACAATGACTTGAATGTTACTAATCAACATAGCATGGATCTTTCATCGGAATCAACTGGTGCTCATGATGATCAGGTAGAAGCACAATTAGAGAGCTCAACTAAGCAGCTTGATCAACTAAAAAAAGAGGTTTCTCAAATGGAAGAGGGATTGGAAGAGAAAAAGGTCCAGGTTAAGGAATTGCAAAAGCAATCTAAGAAACTGGAGGATGCACTGGTCAATGCAAAGAAAAACTCTTCATATCATCAGATGCAGTTGATGAAGCTGCGTAAATGTTTTCTGCAAGTGAAAGATTGCACAGAAAGGCTTAAAACTAGTGAAAAGGAACTTCAGACTCTAATTGATACCGTACTGTTAGAGATTGATGGTGATGGCGTTGGATTAAAGGATGGACTACTAACAAATGGAAGTCTTGATGCTAGATAG 1098 0.4217 MTIDDDSSIYVGGLPYDITEETIRTVFNLYGAILDVKIINDQRSRGKCYCFVTFTNPRSAIDAINDMNGRTIDGRVVKVNGVRSRGGRPNFGRERYYYHNDERNGDWDRGRDRDRDYDHDNSGRDGYRNRSNDWNRDRDRSRDRDQDRDRRFEHMHDYDQDRDPMLDNDWSREDDRAEDEEEHRGDDGDVDRDHNLDFIADRKTDGTSDLDRSFDEDRKDQSRRNNDLNVTNQHSMDLSSESTGAHDDQVEAQLESSTKQLDQLKKEVSQMEEGLEEKKVQVKELQKQSKKLEDALVNAKKNSSYHQMQLMKLRKCFLQVKDCTERLKTSEKELQTLIDTVLLEIDGDGVGLKDGLLTNGSLDAR* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1658 365 SMART rrm1_1 8 80 IPR000504 GO:0003723
Pvu3g1658 365 Coils Coil 247 302 - -
Pvu3g1658 365 CDD RRM_SF 9 80 - -
Pvu3g1658 365 MobiDBLite consensus disorder prediction 108 252 - -
Pvu3g1658 365 MobiDBLite consensus disorder prediction 226 252 - -
Pvu3g1658 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Pvu3g1658 365 SUPERFAMILY RNA-binding domain, RBD 4 112 IPR035979 GO:0003676
Pvu3g1658 365 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 361 - -
Pvu3g1658 365 MobiDBLite consensus disorder prediction 187 225 - -
Pvu3g1658 365 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 361 - -
Pvu3g1658 365 MobiDBLite consensus disorder prediction 108 172 - -
Pvu3g1658 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Pvu3g1658 365 Gene3D - 2 97 IPR012677 -
Pvu3g1658 365 Coils Coil 320 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1658 Pvu-Chr3 36686842 36691570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1658 3 79 Eukaryotic Initiation Factors Gene Family AT2G36660 33.766 6.88e-09 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1658 3 36686842 36691570 Pvu3g1658 3 36686842 36691570 ECH