Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1654 ATGTCTCATTCCAACTGGGAAGCTGATAAAATGTTAGATTTGTATATCCACGATTATCTCATGAAGAGACAATTGCATGCTAGTGCAAGAGTATTTCAGGCCGAAGGAAATGTTTCAACGGGTCCTGTTGTTATAGAAGCACCTAGTGGTTTTCTCTTGGAGTGGTGGTCTGTCTTCTGGGACATATATATTGCCCGGGCAAATCAGAAGCACACAGAAGCAGCAGCATCTTACAGTAAGAATCAACAAACTAAAGCTCGATTAATACAACAAGAACAAGAGTTTCAGAATATAAACCAGAATCAACAAACACAAATGCAACTCTTGTTGCAAAGACGTGCTCAGCAGCAGCGTCTGGGCGGAACTCAACTTATTAGTGGCAGTGCTAGATGTCCTATTATCAATGATCCTTTAATAAGGCAGTACCGGGCAGCTCCTAATTCTATGGCAACAAGATTATATGAGGACAGGTTGAAGCTTCCATGTCAGAGAGATGCTTCAGAAGATGCAAACGTTAAGCAGAAGATAGCTGATGACGTTGGTAGGCTTCTAAACCCAAACCATGCAGTATTATTGAAAGCAGCAGGAACATCTGGTGAAATGGCTTCAGGGCAGCCACTGTTCAGTGCTCCTCCTTGCATTTTACCTGGGAATATTCAACATGTTCAAAATCTGAACCAGAAGCTTCTAGGGTCTACACAAGATATGAAGAGTGAGATGAATGCATTGCTGGGGTCTCAAGCTGTTGTTTCAGAAGGATCCTTTATTGGTTGTCATGGTTCTAATCCAGGTGGTAGCAATTTGACTCTGAAAGGATGGCCTCTAGCTGGACTAGATGAACTTCGTTCTGGTCTTCTCCAGCCAAATAATTTGATGCACTGTCCACAATCTTTCAATCAACTTTCTCTACGGCAGCAACTTATGCTTCTGGCAGAACAAAATTTGATTTCTCCTCCTGTCAGTGATATCGAGAGCAGAAGACTCGGGATGTTTTTTAATGATCGAAACATGAGTCTTGTGAAAGATGGCCAATCAAATTCTGTAGATGATTTAGTTCTGAGTAATGGATCACCTGCACAAGTTGGTTCCCCAATGTTGCCCCATCCAGACTCAGATGTGTTCTTTAAGCAGCTTCAACAATATTCTCAACATCTTCTTCCAAGCCAACCGTGTGAGAATCTCCAGCAGCAAGAAAAAATTGGTTGTGGTCTTGGAAGCATGACTATAGAGGGAAATGTGTCCAATTCCTTACAAGGAAACGATCAGGCTCCAAAAACTAAATTAGTGCGAAAGCGAAAATCAGCATCGTCTTCAGGTCCTGGCATTAGCTCTGGAACTGCAAACACCACCGGACCACCTGCCAGTTCACCTGCCAGTTCACCTGACAGTTCACCTTCAACACCATCTACACAAACACCTGGAGAGATGATAACAGTGTCAACTCTGCAACAGAATGCTCCTTCCTCTAAGTCAGCATTTGTGTTTGGTACTGATGGTTTGGGCTCACTTACATCATCACAAAATCAATTGGCCGATATGGATCACCTTGTGGGTGATGGATGTTTGGGTGACAATATTGACTCATTCATATCTCCTGATGATTCAGACATTAGAGAAAAAGTTGGCAAAGGATTCATTTTCAAGGAGATCAAGCATATAATGGCAGGTTCACATAAAGTTGAGTGTTGTCACTTCTCGTCGGATGGAAAACTTCTTGCTACTGGTGGCCATGATAACAAGGTTTCTCTGTGGTGCACCGAATTGTTTAACCAGACATCTACTCTTGAAGAGCACAGTGAATGGATAACTGATGTTCGATTTTGTCCAAGCATGTTGCGTGTTGCTACATCCTCAGCAGACAAAACTGTTAGGGTTTGGGATATTGATAATCCAAGTTATTCTATTCGAACATTCACTGGACATGCTACAACTGTGACGTCTCTAGATTTTCATCCTAGCAAAGATGACCTCATTTGCTCATGTGACAGTAGTGAGATAAGATACTGGAGTATTAAAAATGGTAGTTGTACTGGGGTTTTCAAGGGTGGTGCAACTCAGATGAGATTTCAACCTTGTTTGGGAAAGCTTCTTGCCGCTGCCGTAGATAATTTCGTATCCATTTTTGATGTAGAAACCCTGGGTTGCAGACTTAAATTACAGGGCCATAATAATGTTGTGCGTTCTGTGTGCTGGGATTCGTCTGGAAAATGTCTGGCTTCTCTTAGTGATGATCTGGTTAGAATATGGACTGTTGGATCTGGCAGCAAAGGGGAATGCATTCACGAGTTTGCTGCATCTGGGAACAAATTCAACACCTGTGTTTTCCATTCCGTCTATCCTTTGTTGGTCATTGGCTGCAATAAGACTATTGAGTTGTGGGACTTCGGTCAGAACAAGACATTGACTTTGCATGCACACGAAAAGGCTGTATCTTCCTTGGCAGTATCAAATGTTACTGGGTTTCTGGCTTCAACTAGTCATGACAAACATTTCAAGATCTGGAAGTGA 2508 0.4234 MSHSNWEADKMLDLYIHDYLMKRQLHASARVFQAEGNVSTGPVVIEAPSGFLLEWWSVFWDIYIARANQKHTEAAASYSKNQQTKARLIQQEQEFQNINQNQQTQMQLLLQRRAQQQRLGGTQLISGSARCPIINDPLIRQYRAAPNSMATRLYEDRLKLPCQRDASEDANVKQKIADDVGRLLNPNHAVLLKAAGTSGEMASGQPLFSAPPCILPGNIQHVQNLNQKLLGSTQDMKSEMNALLGSQAVVSEGSFIGCHGSNPGGSNLTLKGWPLAGLDELRSGLLQPNNLMHCPQSFNQLSLRQQLMLLAEQNLISPPVSDIESRRLGMFFNDRNMSLVKDGQSNSVDDLVLSNGSPAQVGSPMLPHPDSDVFFKQLQQYSQHLLPSQPCENLQQQEKIGCGLGSMTIEGNVSNSLQGNDQAPKTKLVRKRKSASSSGPGISSGTANTTGPPASSPASSPDSSPSTPSTQTPGEMITVSTLQQNAPSSKSAFVFGTDGLGSLTSSQNQLADMDHLVGDGCLGDNIDSFISPDDSDIREKVGKGFIFKEIKHIMAGSHKVECCHFSSDGKLLATGGHDNKVSLWCTELFNQTSTLEEHSEWITDVRFCPSMLRVATSSADKTVRVWDIDNPSYSIRTFTGHATTVTSLDFHPSKDDLICSCDSSEIRYWSIKNGSCTGVFKGGATQMRFQPCLGKLLAAAVDNFVSIFDVETLGCRLKLQGHNNVVRSVCWDSSGKCLASLSDDLVRIWTVGSGSKGECIHEFAASGNKFNTCVFHSVYPLLVIGCNKTIELWDFGQNKTLTLHAHEKAVSSLAVSNVTGFLASTSHDKHFKIWK* 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1654 835 Coils Coil 81 101 - -
Pvu3g1654 835 ProSiteProfiles Trp-Asp (WD) repeats profile. 595 636 IPR001680 GO:0005515
Pvu3g1654 835 ProSiteProfiles Trp-Asp (WD) repeats profile. 638 679 IPR001680 GO:0005515
Pvu3g1654 835 PANTHER LISH-SSDP-WD40 3 835 - -
Pvu3g1654 835 ProSiteProfiles Trp-Asp (WD) repeats profile. 803 835 IPR001680 GO:0005515
Pvu3g1654 835 ProSiteProfiles Trp-Asp (WD) repeats profile. 553 584 IPR001680 GO:0005515
Pvu3g1654 835 Pfam WD domain, G-beta repeat 591 627 IPR001680 GO:0005515
Pvu3g1654 835 Pfam WD domain, G-beta repeat 799 835 IPR001680 GO:0005515
Pvu3g1654 835 Pfam WD domain, G-beta repeat 715 749 IPR001680 GO:0005515
Pvu3g1654 835 Pfam WD domain, G-beta repeat 635 669 IPR001680 GO:0005515
Pvu3g1654 835 Pfam WD domain, G-beta repeat 557 584 IPR001680 GO:0005515
Pvu3g1654 835 SUPERFAMILY WD40 repeat-like 558 835 IPR036322 GO:0005515
Pvu3g1654 835 Pfam LisH 10 36 IPR006594 GO:0005515
Pvu3g1654 835 ProSitePatterns Trp-Asp (WD) repeats signature. 614 628 IPR019775 -
Pvu3g1654 835 SMART Lish 8 40 IPR006594 GO:0005515
Pvu3g1654 835 MobiDBLite consensus disorder prediction 413 474 - -
Pvu3g1654 835 CDD WD40 549 835 - -
Pvu3g1654 835 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 3 835 IPR044716 GO:0003714
Pvu3g1654 835 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 595 630 - -
Pvu3g1654 835 MobiDBLite consensus disorder prediction 436 474 - -
Pvu3g1654 835 Gene3D - 686 835 IPR015943 GO:0005515
Pvu3g1654 835 SMART WD40_4 673 709 IPR001680 GO:0005515
Pvu3g1654 835 SMART WD40_4 712 750 IPR001680 GO:0005515
Pvu3g1654 835 SMART WD40_4 796 835 IPR001680 GO:0005515
Pvu3g1654 835 SMART WD40_4 756 794 IPR001680 GO:0005515
Pvu3g1654 835 SMART WD40_4 631 670 IPR001680 GO:0005515
Pvu3g1654 835 SMART WD40_4 588 627 IPR001680 GO:0005515
Pvu3g1654 835 SMART WD40_4 546 585 IPR001680 GO:0005515
Pvu3g1654 835 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Pvu3g1654 835 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 638 675 - -
Pvu3g1654 835 Gene3D - 534 685 IPR015943 GO:0005515
Pvu3g1654 835 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 803 835 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1654 Pvu-Chr3 36604474 36618622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1654 632 834 Miscellaneous Gene Families AT5G08390 24.762 9.34e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Pvu3g1654 WD40 0.0046 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1654 - - vun:114177037 1308.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1654 3 36604474 36618622 Pvu3g1654 3 36604474 36618622 ECH