Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1642 ATGTCTTCCGGAAAAGTTTTTCTCCTTCTCTCCTTTCACATTTTAATGTGCTCGGTGATGTCAGAAGAAGCTTCTGATTCATGGCTGAAAATCGGTTACTGGTATAGCGGCAGCGACTTTGCCGTATCTGATATAAACTCTGCGCTCTACACTCACCTCATATGCGCTTTCGCACAAGTCAACACATCCACCTTCCAAATCTCCCTCCCCTCAAAAGACCACCAAAGCTTCTCCACTTTCACGAACACTGTCAAACTCAATAACCCTTCCATCACCACACTTCTCTCCACTGGCGGAGACCAAAGCAACGACGCCATCCATTCCATGCTCACCAACGCTTCTTCAAGAAAACCCTTCATCCAATCTTCCATTGCAATGGCCAGGCTTTACGGCTTTCAGGGCCTCGACCTTTCCTGGTCCACCATCCAAACATCCTCGGATTCAGACAACCTCGGACACTTCTTCCAGGAGTGGCGAGTTGCTGCAAAATCTGATGCTCAAGCCAACTCTTCTTCACTCCCAGAACTCATCCTTACTGCTGCAGTTCAAGCTTCACCAGATTTGAATAATGGGACCTACCCAGTGGATTCAATCAGAAGTAACCTCAACTGGGTACATGTTAATACATACTCTTACCGTACACCCGTGACACAAAACTTCACTGCTGCACCCTCAGCTCTATTTGACTCTCATGTTAGTTACATCAACACAGACTATTACATCAGGGCATGGATTGGGAAGGGACTAGGTGCTAACAAGTTGATTTTGGGTTTGCCTTTCTTTGGATATGCGTGGAAACTCCAAAATCCAGAAAGCAACACGATAGGTGCAGCTGCAACTGGTCCAGCAGATTCCACGGACCAAGGAGCCATAAGCTACAAGGACATAAAAGATAATATTGGCCAAAATGGGGCTGCAGTACATTACAATGACAGTTATGTTACAAATTACTGCACATTTGGATGGACCTGGATTGGCTATGACGATGTTGAGGCTGTTCAGAGGAAGGTGAAATACGCCAGAGATATGGGGTTACTTGGTTACTATGTGTGGCAAATTTCTCAGGATGACCACAATTGGACACTTTCTCGCTCAGCAGCTGAACAGATTGATGACGACGGTAAAGAGGAAGAATGGAAATTGTTAGTGATAATTTTGAGTGTAGCTGCTTCTGTTATTCTTATATTAGGTATCACATTCTACTTCCAAAAGAAGAGAATATTCAGAACAGCTGGGACAGTACTGAATGCTGGCAAACGTTCTTGGACTAAAATCTTGAACAATAAAAAAGCTGCAGAACCTTTTCACGGGAATGGTGCAGATTTACATGTCTATAGATTTTCTGATATTAAAGCAGCTACAAATGAATTTTCACATCAAAATAAGATCGGACAAGGTGGTTATGGCCCTGTTTACAAGGGCATCCTACCTGATGGTGAGGAAATAGCCGTAAAAAAGTTATCAAAAGCTTCTACACAGGGATTCGAGGAATTCAAAACTGAGGTAACACTAACAGCAAAGCTACAACATGTTAATCTTGTCCGATTGTTAGGTTTCTGCACTGAACGAGGGGAGCAGATGCTGGTGTATGAGTACTTGCCTAATAAAAGCTTGGACTTCTACCTTTTTG 1630 0.4356 MSSGKVFLLLSFHILMCSVMSEEASDSWLKIGYWYSGSDFAVSDINSALYTHLICAFAQVNTSTFQISLPSKDHQSFSTFTNTVKLNNPSITTLLSTGGDQSNDAIHSMLTNASSRKPFIQSSIAMARLYGFQGLDLSWSTIQTSSDSDNLGHFFQEWRVAAKSDAQANSSSLPELILTAAVQASPDLNNGTYPVDSIRSNLNWVHVNTYSYRTPVTQNFTAAPSALFDSHVSYINTDYYIRAWIGKGLGANKLILGLPFFGYAWKLQNPESNTIGAAATGPADSTDQGAISYKDIKDNIGQNGAAVHYNDSYVTNYCTFGWTWIGYDDVEAVQRKVKYARDMGLLGYYVWQISQDDHNWTLSRSAAEQIDDDGKEEEWKLLVIILSVAASVILILGITFYFQKKRIFRTAGTVLNAGKRSWTKILNNKKAAEPFHGNGADLHVYRFSDIKAATNEFSHQNKIGQGGYGPVYKGILPDGEEIAVKKLSKASTQGFEEFKTEVTLTAKLQHVNLVRLLGFCTERGEQMLVYEYLPNKSLDFYLF 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1642 543 PANTHER CHITINASE 18 543 - -
Pvu3g1642 543 Gene3D Phosphorylase Kinase; domain 1 419 532 - -
Pvu3g1642 543 Gene3D - 260 327 IPR029070 -
Pvu3g1642 543 ProSiteProfiles Protein kinase domain profile. 457 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g1642 543 SUPERFAMILY Chitinase insertion domain 261 327 IPR029070 -
Pvu3g1642 543 Pfam Glycosyl hydrolases family 18 31 356 IPR001223 GO:0005975
Pvu3g1642 543 Pfam Protein tyrosine and serine/threonine kinase 459 542 IPR001245 GO:0004672|GO:0006468
Pvu3g1642 543 SUPERFAMILY Protein kinase-like (PK-like) 442 542 IPR011009 -
Pvu3g1642 543 Gene3D Glycosidases 42 357 - -
Pvu3g1642 543 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE 18 543 - -
Pvu3g1642 543 SMART 2g34 28 356 IPR011583 GO:0008061
Pvu3g1642 543 SUPERFAMILY (Trans)glycosidases 29 369 IPR017853 -
Pvu3g1642 543 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 28 373 IPR001223 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1642 Pvu-Chr3 36395057 36399912 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1642 1 371 Glycoside Hydrolase AT4G19810 43.085 2.48e-92 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pvu3g1642 Glyco_hydro_18 1.7e-62 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1642 - - vun:114175226 906.746
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1642 3 36395057 36399912 Pvu3g1642 3 36395057 36399912 ECH