Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1627 ATGCAACCTTGTAGTGGAGAAATGCAAGGCCCTAACAATAACTCTCTCTTTAACGGCAACAACAATAGCAGTAACAATGAGCAACAGATTCAGTTTGACGCAGCTTCCAACGACGATTTCCTCAAACAAATGCTTTCCAACCTTCCTTCTTCTCCATGGACACTGGACCCCAAACCCAACCCCAACCCCTTGTGGGACCCTAATTCCGACGAAACCACGCCGGAGAATAACGTCCTTTACCCCTACGACCTCCAACAAGCCAACTTGGCCTCCAAGTTTCGCAACCACCACATCACCGATGACAAAGCCTCCGCTCTAATGCTCCAACACCACCAACTCCTCCTCTCCTCCGCCGCCGCCGCCGCTGCCGCTGCCAATTCTCCCCTTCTCCAAATGCCCGTCTCCTCGCTAAACGACGTCGTTCATGCGCCCTCCTTCAAATCTCCCACTCCACCTCTCTACAACGCCTTCTCCGCCTCTCTCCAAGGCGCCGCCCAACCCTCCAACCAAACTCACCATTTTCAACTTCCTCAACAGGGGCAGAGTTTCGGAGCTTCGGCTCCGGCGAGTGGCGCTTCCGGTCAGCCGAAGCAGAGGGTTAGGGCGAGGAGAGGTCAAGCCACGGACCCACACAGCATCGCCGAAAGGTTACGGAGGGAGAGAATCGCAGAGCGAATGAAGGCCCTACAGGAACTGGTTCCCAACGCCAACAAGACTGATAAGGCCTCCATGTTGGATGAGATCATCGATTATGTGAAGTTCCTACAGCTCCAAGTCAAGGTTTTAAGCATGAGCAGACTGGGAGGTGCAGCCGCTGTAGCACCCCTTGTTGCTGATATATCTTCGGAGGGAGGCGGTGACTGCGTTCAACCAAAAAGCAACAACGCCAACGGTAACTCAAACGACACCCTAGCCACGACGGAGCAACAGGTGGCGAAGCTGATGGAGGAAGACATGGGGTCCGCCATGCAGTACCTGCAGGGGAAAGGTCTCTGCCTTATGCCGATTTCTCTGGCCACCGCCATCTCCAAAGCCACGTGTCACGCCAGGAACCCTTTCATCAACGGTGATGGGCCCTCCTCTCCCGGAATGTCCGCGCTCACCCTGCACTCTTCCACTCTCAGCAATGGCCTCGTGAAAGACACCGCCTCCGTTTCCAAGTCCTGA 1167 0.5527 MQPCSGEMQGPNNNSLFNGNNNSSNNEQQIQFDAASNDDFLKQMLSNLPSSPWTLDPKPNPNPLWDPNSDETTPENNVLYPYDLQQANLASKFRNHHITDDKASALMLQHHQLLLSSAAAAAAAANSPLLQMPVSSLNDVVHAPSFKSPTPPLYNAFSASLQGAAQPSNQTHHFQLPQQGQSFGASAPASGASGQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADISSEGGGDCVQPKSNNANGNSNDTLATTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISKATCHARNPFINGDGPSSPGMSALTLHSSTLSNGLVKDTASVSKS* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1627 388 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 29 355 - -
Pvu3g1627 388 Pfam Helix-loop-helix DNA-binding domain 211 256 IPR011598 GO:0046983
Pvu3g1627 388 PANTHER TRANSCRIPTION FACTOR BHLH69 29 355 - -
Pvu3g1627 388 MobiDBLite consensus disorder prediction 180 217 - -
Pvu3g1627 388 Gene3D - 201 263 IPR036638 GO:0046983
Pvu3g1627 388 MobiDBLite consensus disorder prediction 202 217 - -
Pvu3g1627 388 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 266 IPR036638 GO:0046983
Pvu3g1627 388 MobiDBLite consensus disorder prediction 45 76 - -
Pvu3g1627 388 SMART finulus 212 261 IPR011598 GO:0046983
Pvu3g1627 388 MobiDBLite consensus disorder prediction 1 29 - -
Pvu3g1627 388 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 206 255 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1627 Pvu-Chr3 36259403 36262520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1627 195 377 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 69.841 6.37e-89 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu3g1627 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1627 - - pvu:PHAVU_003G157100g 676.396