Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1623 ATGCTCCGCAGATTGTTCTTCCGCAAGCCTCCAGATGGCCTCCTCGAGATCTGCGACAGAGTTTACGTTTTTGATTGCTGCTTCACCACGGATGCTTGGAAAGAAGCGAATTATAAAGAGTACATGGATGGGATAGTTTGTCAACTCAAGGAGAACTTGCCTGATGCTTCGATTATGATTTTCAATTTTCGTGAGGAAGATACCAAGAGTCAGATGGCAAGTATCATGTCTGAGTATGACGTTACTATCATGGACTATCCTCGGCACTACGAAGGTGTTCCCGTGCTCAAAATGGAGCTCGTCCACCACTTTCTGAGGTCTGGTGAAAGCTGGCTCTCGCTTGGGCAACAAAATGTGTTGTTGATGCATTGTGAAAGTGGTGGTTGGCCTGTTTTGGCTTTCATGTTGGCTGCATTGTTGATTTATAGAAAGGTTTATACTGGGGAGAAGCGGACTCTCGATATGGTTTATAGGCAGGCTCCTCACGAGCTTCTGCATTTGTTGTCACCGTTGAATCCTATCCCTTCCCAACTGAGGTATCTGCTGTATGTTTCCAGGAGGAATGTGGCCTTAGATTGGCCTCCTCTGGACAGGGCACTTTTGCTGGACTGCATCATTCTCAGATTCTTCCCAAACTTCGACGATGAAGGTGGTTGTCATCCCATGTTTAGAATTTATGGACAGGATCCCTTTAATGCTGATAAAAATCCAAAAATGTTGTACTCAACGCCAAAGAGAAGCAAAAATGTCCGGGCCTATAAGCAGGGAGAGAGTGAGCTTATTAAAATTGATATCAATTGCCATATTCAAGGTGATATTGTCCTTGAGACAATTAACTTGAATGGTGACCTGGAGCGTGAAAGGATGATGTTTCGAATCATGTTTAACACAGCCTTTGTTAGATCAAATATTATGATGCTTAACCGGGATGAAATTGACATTTTATGGGATGCTGAAGACCACTTTCCAAAAGATTTTAGAGTTGAGATCCTTTTCTCAGAGATGGATGCTGCAGTAGTTATTGCCGATAGGACCTCATGCTTTGAGGAGAAGGAAGGACTACCAATGGAAGCATTTGCCAAGGTTCAAGAAATCTTTAGCCATGTAGACTGGATGAACCCCAAGGCAGATGCTGCACTAAATGCTCTCCAACTGATAAGCGCTTCAACTATGAATGATAGGTTGGATGAAAAAGGTCCTAGAACGCCTCAAGGAAATTTGAGTGAAGAGGTACAATCTTCATTTTCACCCAAGACATCCCCAGATAATGATATGAGTAGAAAAGAGGACAAGACCAACAAGGTAGAGGGTATTCCGCAGCAACCTAGTACACCTAACAATATTTGTCAACAGTCAACCAGATTTTCTAAAAAGACCTTGGAATCCAATAAATGTCCAACAGGACCTACAAATCTTGATATAAAACTGCAGGCGCCTCATCCTGCCTTATCTTCTACCGATACTTCTTTTTCCCCTCGAACACCTCCTTTAAGGCCTCAATCCACTAGTGCTAAAGAAGCTCACGATTCTCCTCGCCAAACAGAATCGCCCCCTTCTTATGTTTTGCCTTTGCAATCAAAACACCAATCACAAGACAGAAGTCATTCATCTATTTCTGTCCCTACACCTGACACCCAATCGTCATCTACTTTTCATAGCAAGTCACCGGCCGACACCATTTCCTATCCTTCAGCTTCAACAACTACTTCAACTCAATCATCTCCGTCATTTTCTTCAAAAAATGTGGATGAGATTCCTCCTATTAAAACAAGAATAGAGTCTTTCCCTTCACGACCTCCAACTCCGCCTCCTCCTCCCACTCCGCCTCCTCCTCCCACTCCGCCACTAAATGATCATAGACGAGTTCGAGCTAGACCACCACCACCACCACCTCCTCCTCCAAAGAAAGAACTACATGTTAAAGCTGGACGCCATCCTTCTCCTTCATCACATAGGAATGTGGAGCCACAGGTTAGAGATGGACCCTCTCCTCCCCTTTCTCTAAAAGAGGAGCAACCTACTAGGTTTGAACCTCCTCCACCTCCTTGTCTCTCTGGGCTAGTTGCAGGTTCTACTATAGTACCACCTCCACCTCCACTTTCAAGTGAAGTACATTACTCAAATCACACTAATTCATCGTTACAAAAATCTTTAGCTCCTCCCCCTCCTCCTGGGGCACCTGCTCCTCCCCCGCCTCCCCCTCCTCCTGGGGCACCTGCTCCTCCGCCTCCTCCTGGAGCATCTGCTCCTCCCCCGCCTCCTGGAGCACCTGCTCCTCCACCTCCACCTGGAGCACCTGCTGCTCCACCTCCTCCATTGCCCTTTGGTAAAGGAGGTCTAAAACCTCCAGGATCTCTTTCTGGGAACGGTGATGTGTCAAGCACAACAGGACCTCGATCTAGTTCACCAACCAACTTAAAGGGACGAATTTTATCACGAACAATTAACTCAAAGAATAACACAAAAAAGTTGAAGCCACTTCATTGGTTGAAACTATCTAGAGCAGTGCAAGGAAGTTTGTGGGCTGAGACACAGAAGTCTGGCGAAGCTTCCAAGGCCCCAGAGATTGATATGTCAGAGCTTGAGCATCTCTTCTCAGCGGCAGCCCCAAGTTCAAGTATTGCCAAAAAGTCAAATGTCCAAAGCTCAACTGGGCCTAAATCAGAAAAAGTGCAACTGATTGAGCATAGGCGAGCATATAACTGTGAAATCATGCTTTCACAAGTGAAAGTGCCGGTGCATGATTTAATGAGCTCTGTGCTAGCACTGGAAGAGTCAACACTGGACACTGATCAGGTTGAGAACCTCATAAAGTTCTGTCCAACAAAAGAGGAGATGGAATTACTCAAGGGTTATAATGGGGAGAAGGAGAAGTTAGGAAGATGTGAACAGTTCTTAATGGAATTGATGAAAGTACCACGAGTGGAATCCAAGCTCAGAGTTTTTTCATTCAAGATTCAATTTCGCTCTCAGGTTTCTGACCTAAGAAAGAGCCTGAGTGTTGTGAATGCTGCTTCAGAAGAGATCAGGAATTCGGTAAAACTGAAGAGAATTATGCAAACAATACTTTCTTTAGGAAATGCTTTGAACCAAGGAACTGCCAGGGGTTCTGCTATTGGATTCAGATTAGATAGCCTTCTGAAACTAACCGAGACACGTGCAAGAGACAAGAAGATGACTCTCATGCATTATCTTTGTAAGGTGCTAGTTGACAAACTACCGGAAGTCTTAGACTTCTCCAAGGATCTTTCTAACCTAGATCCGGCAACAAAGATCCAATTGAAGTTTTTGGCTGAGGAGATGCAAACTATTAACAAAGGATTAGAAAAAGTAGTGCAGGAACTATCAACCGCTGAAAATGATGGGCCTATATCAGAAACTTTCCGCAAGAAATTGAAAGAATTCCTCGGTTCTGCTGAAGCTGAAGTCCGCTCATTGGCTTCACTATATTCTAGCGTGGGCAGGAGCGTGGATGCATTGATTCTCTATTTTGGTGAAGATCCATCTCGTTGCCCATTTGAACAAGTCGCATCAACTTTGCTCAACTTTACCAGGATGTTCAACAAAGCCCATGAAGAAAACTGCAAGCAGCTAGAACTTGAAATGAAGAAAACTGAAAATGAGAAAAAGAAATGTGAATCAGAAAGAATTTTACCTACAGCTATCCGGACTGGCAATGTCAAATAG 3687 0.4432 MLRRLFFRKPPDGLLEICDRVYVFDCCFTTDAWKEANYKEYMDGIVCQLKENLPDASIMIFNFREEDTKSQMASIMSEYDVTIMDYPRHYEGVPVLKMELVHHFLRSGESWLSLGQQNVLLMHCESGGWPVLAFMLAALLIYRKVYTGEKRTLDMVYRQAPHELLHLLSPLNPIPSQLRYLLYVSRRNVALDWPPLDRALLLDCIILRFFPNFDDEGGCHPMFRIYGQDPFNADKNPKMLYSTPKRSKNVRAYKQGESELIKIDINCHIQGDIVLETINLNGDLERERMMFRIMFNTAFVRSNIMMLNRDEIDILWDAEDHFPKDFRVEILFSEMDAAVVIADRTSCFEEKEGLPMEAFAKVQEIFSHVDWMNPKADAALNALQLISASTMNDRLDEKGPRTPQGNLSEEVQSSFSPKTSPDNDMSRKEDKTNKVEGIPQQPSTPNNICQQSTRFSKKTLESNKCPTGPTNLDIKLQAPHPALSSTDTSFSPRTPPLRPQSTSAKEAHDSPRQTESPPSYVLPLQSKHQSQDRSHSSISVPTPDTQSSSTFHSKSPADTISYPSASTTTSTQSSPSFSSKNVDEIPPIKTRIESFPSRPPTPPPPPTPPPPPTPPLNDHRRVRARPPPPPPPPPKKELHVKAGRHPSPSSHRNVEPQVRDGPSPPLSLKEEQPTRFEPPPPPCLSGLVAGSTIVPPPPPLSSEVHYSNHTNSSLQKSLAPPPPPGAPAPPPPPPPPGAPAPPPPPGASAPPPPPGAPAPPPPPGAPAAPPPPLPFGKGGLKPPGSLSGNGDVSSTTGPRSSSPTNLKGRILSRTINSKNNTKKLKPLHWLKLSRAVQGSLWAETQKSGEASKAPEIDMSELEHLFSAAAPSSSIAKKSNVQSSTGPKSEKVQLIEHRRAYNCEIMLSQVKVPVHDLMSSVLALEESTLDTDQVENLIKFCPTKEEMELLKGYNGEKEKLGRCEQFLMELMKVPRVESKLRVFSFKIQFRSQVSDLRKSLSVVNAASEEIRNSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARDKKMTLMHYLCKVLVDKLPEVLDFSKDLSNLDPATKIQLKFLAEEMQTINKGLEKVVQELSTAENDGPISETFRKKLKEFLGSAEAEVRSLASLYSSVGRSVDALILYFGEDPSRCPFEQVASTLLNFTRMFNKAHEENCKQLELEMKKTENEKKKCESERILPTAIRTGNVK* 1229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1623 1228 Gene3D Protein tyrosine phosphatase superfamily 12 189 IPR029021 -
Pvu3g1623 1228 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 199 335 IPR035892 -
Pvu3g1623 1228 MobiDBLite consensus disorder prediction 481 819 - -
Pvu3g1623 1228 Gene3D Formin, FH2 domain 812 1198 IPR042201 -
Pvu3g1623 1228 Pfam Formin Homology 2 Domain 818 1187 IPR015425 -
Pvu3g1623 1228 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 10 185 IPR029021 -
Pvu3g1623 1228 MobiDBLite consensus disorder prediction 596 617 - -
Pvu3g1623 1228 MobiDBLite consensus disorder prediction 481 583 - -
Pvu3g1623 1228 MobiDBLite consensus disorder prediction 405 421 - -
Pvu3g1623 1228 MobiDBLite consensus disorder prediction 717 778 - -
Pvu3g1623 1228 SMART PTEN_C2_2 195 334 IPR014020 -
Pvu3g1623 1228 MobiDBLite consensus disorder prediction 393 449 - -
Pvu3g1623 1228 ProSiteProfiles Formin homology-2 (FH2) domain profile. 814 1213 IPR015425 -
Pvu3g1623 1228 SMART it6_source 603 1228 IPR015425 -
Pvu3g1623 1228 Coils Coil 1188 1215 - -
Pvu3g1623 1228 Gene3D - 194 338 - -
Pvu3g1623 1228 PANTHER FORMIN-J 697 1211 - -
Pvu3g1623 1228 PANTHER FORMIN-J 1 700 - -
Pvu3g1623 1228 Pfam C2 domain of PTEN tumour-suppressor protein 198 334 IPR014020 -
Pvu3g1623 1228 MobiDBLite consensus disorder prediction 787 819 - -
Pvu3g1623 1228 SUPERFAMILY Formin homology 2 domain (FH2 domain) 889 1215 - -
Pvu3g1623 1228 ProSiteProfiles C2 tensin-type domain profile. 197 335 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1623 Pvu-Chr3 36181801 36192420 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1623 796 1211 Protein tyrosine phosphatase (PTP) family AT5G58160 74.580 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1623 - - var:108329436 1195.65