Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1608 ATGGAATTCAAGTTTCGTGATGGCGAAAACCGAAGCATTCCCCTCTCTCCACAGCAGCGCCCTCTCTCCATTGTCCCTTTAGTCTCCGGTCACCCATTACGAGGTGGTTTTCCAAGTCCTGGTGGTTTTCCGTGTTCTGGTGGTTTTCCGAGTATTGTCCCTTCGTCGCCGAGAGTATACCCGATCAATGCCGAGGAATCGATCCGGCGAGAGATGGTAAGGGAGCAGATAAGGCGGGAACTGGAGAAGGAGGAAATAAGGAGAGAGATTCTGGCCAGGGAGATGGCATGGCGACGTGACTTGGAGGAGGAGGTTAGGAGAGAAATGGCGTCGGAGAGAGCACTGAGAATGCCCATGCACAGGATGGAAGGAGTCACATTTGGTGAACGAGTCTTCTCGTATTCTATGAACCCAGGAATGAGACTGAACAACCCTGATCATAACAACAACATATTTGGTGGACCACAACCTCAGTTAGCCCCTAAAGTTGATATCACACAGTTCAACAAGCAGATACCAGATGAAACTAACCAGGATAAAATAATAAAATTGGCTAAGCCAAATGCTGATCTTCTTAGTTTGAAGTGCAAAGAGGTGCTAGATGTTAATCATGGTGGTGCGAAGCGCAAACTGGTTCCAGGTGATGACAATCATGCTGGATCTAGCTCGCAGAAGAAACCCAAGAAGGAGTGGAGTTGTGCATTATGTCAGATTGTTGCCACAAGTGAAAAGGGCTTGACTGATCATCTTCAAGGGAAAAAGCACAAGGTTAAAGCAGCATCTCTTACAACTAAAAAAATGGGGTTGGATGCAAGACAGGATGGTGAAACACTTGGATCTGGCATTAGTCCTGCAGACAAAGACAAAGGCAAAGTAGAACTCAGTGCATTATGTCAGATTGTTGCAACAGGTGAAAAGGGCTTGAATGATCATCTTCAAGGGAAAAACCACAACGTTAAAGCAGTGTCCCTTACAACTCAAAAAATGGGGTTGGATGCAAGACAGGATGGTGAAACAATTGGATCTGGCATTAGTCCTGCAGACAAAGACAAAGACAAAGTAGAACTCATAAAAATGGACTTGGCTGTGCAGAAAAGTCACGATTCAGGTGGCATAGATACTAAAAATGAAGCAACCATTGAGAAAGAAGTTCCGAAAACAAAGGCATCAACAACAAGGAAGAAGTTTAAATTTTATTGTGCATTTTGTCAAGTTCGAACTCACTCAGAAGTTGTCATGGAAAGTCATAAAAGTGGAAAAAGGCATCTGGCTAATATTACAAAACTTAACCTAAACAATTCTGCTGGTGCTTGTGCTGCTGCAAATTCGGAGTAA 1335 0.4412 MEFKFRDGENRSIPLSPQQRPLSIVPLVSGHPLRGGFPSPGGFPCSGGFPSIVPSSPRVYPINAEESIRREMVREQIRRELEKEEIRREILAREMAWRRDLEEEVRREMASERALRMPMHRMEGVTFGERVFSYSMNPGMRLNNPDHNNNIFGGPQPQLAPKVDITQFNKQIPDETNQDKIIKLAKPNADLLSLKCKEVLDVNHGGAKRKLVPGDDNHAGSSSQKKPKKEWSCALCQIVATSEKGLTDHLQGKKHKVKAASLTTKKMGLDARQDGETLGSGISPADKDKGKVELSALCQIVATGEKGLNDHLQGKNHNVKAVSLTTQKMGLDARQDGETIGSGISPADKDKDKVELIKMDLAVQKSHDSGGIDTKNEATIEKEVPKTKASTTRKKFKFYCAFCQVRTHSEVVMESHKSGKRHLANITKLNLNNSAGACAAANSE* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1608 444 Pfam Zinc-finger of C2H2 type 231 255 - -
Pvu3g1608 444 Pfam Zinc-finger of C2H2 type 398 422 - -
Pvu3g1608 444 Pfam Zinc-finger of C2H2 type 297 317 - -
Pvu3g1608 444 SUPERFAMILY beta-beta-alpha zinc fingers 396 428 IPR036236 -
Pvu3g1608 444 SMART c2h2final6 231 255 IPR013087 -
Pvu3g1608 444 SMART c2h2final6 398 422 IPR013087 -
Pvu3g1608 444 Coils Coil 74 94 - -
Pvu3g1608 444 MobiDBLite consensus disorder prediction 207 225 - -
Pvu3g1608 444 SUPERFAMILY beta-beta-alpha zinc fingers 209 264 IPR036236 -
Pvu3g1608 444 PANTHER OS06G0651300 PROTEIN 1 272 - -
Pvu3g1608 444 PANTHER OS06G0651300 PROTEIN 295 430 - -
Pvu3g1608 444 Gene3D Classic Zinc Finger 215 261 - -
Pvu3g1608 444 Gene3D Classic Zinc Finger 378 428 - -
Pvu3g1608 444 PANTHER OS06G0651300 PROTEIN-RELATED 295 430 - -
Pvu3g1608 444 PANTHER OS06G0651300 PROTEIN-RELATED 1 272 - -
Pvu3g1608 444 MobiDBLite consensus disorder prediction 207 226 - -
Pvu3g1608 444 SMART ZnF_U1_5 395 429 IPR003604 GO:0003676|GO:0008270
Pvu3g1608 444 SMART ZnF_U1_5 297 324 IPR003604 GO:0003676|GO:0008270
Pvu3g1608 444 SMART ZnF_U1_5 228 262 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1608 Pvu-Chr3 36011061 36014398 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1608 230 426 C2H2 Transcription Factor Family AT2G19380 22.059 1.61e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1608 - - pvu:PHAVU_003G155200g 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1608 3 36011061 36014398 Pvu3g1608 3 36011061 36014398 ECH