Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1602 ATGGAAGCCAGTGCTGGACTGGTCGCTGGTTCTCACAATCGCAACGAGCTCGTTGTCATTCATGGCCATGAAGAGCACAAGCCTTTGAAGAACTTGGATGGGCAAGTGTGCGAGATATGTGGCGATGATGTGGGAGTCACGGTGGATGGAGACATGTTTGTGGCATGCAATGAGTGTGGTTTTCCGGCATGCCGACCTTGCTATGAGTATGAACGAAGAGAAGGGAGACAAGTTTGTCCACAGTGCAAAACCAGATACAAGCGTCTTAAAGGGAGCGCGCGGGTTGAGGGAGATGATGATGAGGAAGACGTGGATGATATCGAACATGAATTCAACATTGATGACCAAATGAACAAGCATAATCACTCTGCTGAGGCCATGCTGCATGGGAAGATGAGCTATGGAAGAGGTACTGAAGATGATGAGAATTCTCAGTTCCCAGCTGTTATTGCCGGTGGTCGTTCTCGGCCTGTTAGTGGAGAGTTGCCAATATCATCTCATTATGGGGAGAACCCTTCACTGCATAATCGTGTGCACCCATATCTGGCATCTGATCCTAGAAATGGAAAATGGGATGAAAACAAAGAGGATAGAATGGATGACTGGAAGTTGCAACAAGGAAATTTGGGGCCTGAACCTGATGAAGATCCAGATGCAGCCATGTTGGATGAAGCAAGGCAACCACTGTCAAGGAAGATACCAATAGCATCCAGCAAAGTGAATCCATATAGGATGGTGATCGTGGCGCGGCTTGTTATCCTTGCCTTCTTCCTCCGTTATAGACTGATGAATCCTGTACCTGATGCACTGGGGCTGTGGCTAACTTCTATTATATGTGAAATCTGGTTTGCTTTTTCATGGATCCTTGATCAGTTTCCCAAATGGTTTCCCATTGATCGAGAGACCTACCTTGATCGTCTTTCATTAAGGTATGAGCGTGAAGGTGAACCAAACATGCTTGCTCCTGTAGATGTTTTTGTTAGTACTGTGGATCCCATGAAGGAACCTCCATTGGTTACAGCAAACACTGTTCTCTCAATCTTGGCCATGGATTACCCGGTTGAGAAGATATCATGTTACATTTCTGATGACGGAGCTTCAATGTGTACCTTTGAGGCCCTGTCAGAAACTGCAGAGTTTGCTAGGAAGTGGGTACCATTCTGCAAGAAATTTTCTATCGAACCTCGTGCACCAGAGATGTACTTCTGTGAGAAAATTGATTACCTCAAGGACAAGGTGCAGCCCACCTTTGTTAAGGAGCGTCGAGCTATGAAGAGAGAATATGAAGAGTTTAAGGTTAGGATCAATGCACTTGTAGCGAAAGCTCAGAAGGTTCCACAAGGAGGATGGATTATGCAGGATGGGACACCATGGCCAGGAAATAATACTAAGGATCATCCTGGTATGATTCAAGTCTTTCTTGGTCACAGTGGAGGTCATGATACTGAAGGAAACGAGCTTCCTCGTCTTGTTTATGTTTCCCGAGAGAAAAGGCCAGGATTCCAACACCACAAGAAAGCGGGGGCTATGAATGCTTTGATTCGGGTCTCTGCTGTGCTTACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCATTATGTCAATAACAGCAAAGCTGCTCGAGAGGCCATGTGTTTCTTAATGGACCCCCAAACTGGGAAGAAGGTCTGCTATGTCCAGTTTCCTCAAAGATTTGATGGTATTGATACGCACGATCGTTATGCCAATAGGAACACAGTTTTCTTTGATATAAATATGAAGGGTCTAGATGGAATTCAGGGTCCTGCATATGTTGGCACTGGGTGTGTATTTAGGAGGCAAGCTTTATACGGTTATAATCCTCCCAAGGATGCCAAACGTCCAAAAATGATAAGCTGTGACTGCTGCCCATGTTTTGGAAAGCGCAAGAAGGTCAAGTATGAAGGGAATGGTGCAGATGGAGAGGCTGCAAGCCTAAGAGGACCGGACGATGATAAACAGATGTTGATGTCCCAGATGAATTTTGAGAAGAAATTTGGCCAGTCATCTATCTTTGTGACTTCAACCTTGATGGAAGAGGGTGGTGTGCCTCCTTCTTCAAGTCCAGCTAGCCAGCTTAAAGAAGCCATTCACGTAATCAGCTGTGGATATGAAGATAAAACTGAATGGGGAATTGAGCTGGGTTGGATTTATGGGTCTATCACAGAGGACATTCTAACAGGTTTTAAGATGCATTGCCGTGGTTGGAGGTCCATTTATTGCATGCCAAAGCGTCCTGCATTCAAGGGTACTGCTCCTATCAACTTGTCTGATAGGCTTAACCAGGTGCTTCGTTGGGCACTTGGCTCCATTGAAATCTTCTTCAGTCGCCATTGTCCTCTATGGTATGGCTTTAAGGAAGGAAATTTGAAGTGGCTTGAGCGATTTGCCTATGCAAACACAACTGTCTACCCCTTCACCTCCATACCTCTAGTTGCCTACTGTATTCTTCCTGCTGTCTGTTTACTCACTGATAAATTCATCATGCCACCGATAAGCACTTTTGCGGGTTTGTATTTCGTTGCTCTATTCTCTTCAATCATTGCAACTGGCCTTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAGGAATGGTGGAGAAATGAGCAATTCTGGGTCATTGGTGGTGTGTCAGCTCACCTCTTTGCAGTCATACAAGGTCTTCTGAAGGTTTTGGCTGGAATTGACACTAACTTCACTGTTACATCAAAGGCAACAGATGATGAAGAATTTTCAGAATTATACACCTTTAAGTGGACTACTCTCCTGATTCCTCCAACCACTATCCTAATAATCAATATTGTTGGTGTTGTTGCTGGAATCTCAGATGCCATAAACAATGGGTACCAATCTTGGGGACCTCTATTTGGAAAACTGTTCTTTTCATTTTGGGTGATTGTCCATCTGTATCCATTCCTTAAAGGTTTGATGGGTCGCCAAAACCGCACACCGACCATAGTTGTTATATGGTCGGTACTACTGGCTTCCATTTTTTCTTTGCTTTGGGTAAGAATTGACCCATTCGTATTAAAAACTAAGGGACCTGATACCAAGCTATGTGGAATCAACTGTTGA 3096 0.4451 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDDVGVTVDGDMFVACNECGFPACRPCYEYERREGRQVCPQCKTRYKRLKGSARVEGDDDEEDVDDIEHEFNIDDQMNKHNHSAEAMLHGKMSYGRGTEDDENSQFPAVIAGGRSRPVSGELPISSHYGENPSLHNRVHPYLASDPRNGKWDENKEDRMDDWKLQQGNLGPEPDEDPDAAMLDEARQPLSRKIPIASSKVNPYRMVIVARLVILAFFLRYRLMNPVPDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVEKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPQGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQTGKKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPAYVGTGCVFRRQALYGYNPPKDAKRPKMISCDCCPCFGKRKKVKYEGNGADGEAASLRGPDDDKQMLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPASQLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSRHCPLWYGFKEGNLKWLERFAYANTTVYPFTSIPLVAYCILPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGLLELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKATDDEEFSELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC* 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1602 1031 Coils Coil 421 441 - -
Pvu3g1602 1031 SUPERFAMILY Nucleotide-diphospho-sugar transferases 336 806 IPR029044 -
Pvu3g1602 1031 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Pvu3g1602 1031 Pfam Cellulose synthase 323 1025 IPR005150 GO:0016020|GO:0016760|GO:0030244
Pvu3g1602 1031 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Pvu3g1602 1031 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Pvu3g1602 1031 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 1 1031 - -
Pvu3g1602 1031 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1031 - -
Pvu3g1602 1031 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Pvu3g1602 1031 MobiDBLite consensus disorder prediction 151 194 - -
Pvu3g1602 1031 SUPERFAMILY RING/U-box 21 109 - -
Pvu3g1602 1031 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 468 614 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1602 Pvu-Chr3 35952680 35958487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1602 1 1031 Cell Wall Biosynthesis AT5G17420 85.493 0.0 1820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1602 K10999 - gmx:100779834 2044.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1602 3 35952680 35958487 Pvu3g1602 3 35952680 35958487 ECH
Pvu3g1602 3 35952680 35958487 Pvu9g2115 9 30314266 30319989 PCT
Pvu9g2116 9 30325929 30331572 Pvu3g1602 3 35952680 35958487 PCT