Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1596 ATGGGCTTGTTTAGTTTAGCAGTGTTCCTATTTTTCTTTCTGGATACTGTTCATTCTACAGTTCTTTGGAAAGAAAATGCTGGCATCGTGAATGGAAAAAAATCACTTGTTTCATTCATGTCAGGCATTGTTTCAGACCCTCAAAACGCTCTTGATAGTTGGAAGTCACCCGGTGTTCATGTTTGTGATTGGTCAGGTGTGAGATGCAACAATGCAAGCGACATGATCGTAGAGGTTGATCTCAGTGGAAGGTCTCTAGGAGGCACCATTTCCCCTGCTCTTGCTAACCTCTCTTCCTTGCAAATTCTTGATCTTTCTGGGAACTTTTTGGTGGGGCAAATTCCAAAAGAAATAGGCCATTTGGTTCAGCTTAGACAACTCAGTTTGTCTGGGAATTTTCTGGAGGGTCACATTCCATCCGAGTTTGGTTCACTTCACAACTTGGACTACCTTGACTTGGGAAGCAATCATCTTGAGGGAGAGATCCCCCCATCACTCTTCTGCAATGGGACTTCACTGGGTTATGTAGACCTCTCTAACAATTCCTTAGGGGGCCAAATCCCCTTGAATAAAGTGTGTATCCTTAAAGAACTCCAGTTCTTATTACTTTGGTCTAACAAGCTTTCAGGAAAAGTTCCTTTAGCACTTTCAAATTCTACCAAACTAAAATGGCTTGATTTGGGGTTGAATATGTTGAGTGGAGAGCTTCCTTCTAAGATTGTAAGTAACTGGCCACAACTACAATTCCTCTACTTGTCATACAACAATTTTACTAGCCATGATGGTAATACCAACCTTGAGCCTTTCTTTGCTTCCTTGGTGAATTTATCACACTTTCAAGAACTTGAATTGGCGGGAAACAATCTTGGTGGCAAGCTGCCTCATAGTATTGGTGAGCTTCCTACCAGCCTGCAACAACTCCACCTAGAAAAAAATTTCATATATGGCTCCATACCTGCTAGTATTGCCAACCTTGTCAACCTGAGTTTCTTGAAGTTGTCTAGTAACCTAATAAATGGATCGATCCCTCCCAGCCTCAGCCATATGAATAGGCTAGAAAGAATTTATTTGTCAAATAATTCAATATCTGGTGAGATTCCTTCAACCCTTGGAGGCATTCAGCATCTGGGACTTCTTGACTTGTCAAGAAACATGCTTTCTGGCCCAATACCAGATAGTTTCGCAAATCTCACTCAGTTAAGAAGGCTTTTACTTTATGACAACCAGCTTTCTGGAACAATCCCACCAAGTCTGGGAAAATGTGTCAATTTGGAGATTTTAGACTTATCTCACAACAACATAACTGGGTTGATTCCGGCAGAAGTTGCAGCCTTGGGTAGCTTGAAACTATACCTGAATTTATCAAACAATAACTTACATGGGTCTTTACCATTAGAACTCAGTAAAATGGACATGGTTCTAGCTATTGATTTATCATTGAATAACCTCTCTGGCAGCATCCCACCACAACTGGAAAGTTGCATAGCACTTGAGTACCTCAACCTCTCTGGTAACTCCTTTGAGGGCCCTCTCCCTTATTCATTAGGCCAATTGCTCTATATTAGATCACTTGACGTGTCTTTAAATCAGTTGACTGGGGCAATACCACAGTCCATGCAGCTGTCTCCCTCGCTGAAGGAACTTAATTTCTCTTTCAACAAATTCTCAGGGAAAGTGTCAAACAAGGGAGCATTTTCAAACCTTACCATAGACTCTTTCCTGGGAAATCGTGGTCTCTGTGGCCCGTTTAAAGGCATGCAACAATGTCACAAGAAATGTAGTTATCATTTGGTGTTCTTGTTAATTCCCGTGTCACTATTTGGCACCCCTCTCCTATGCATACTTTTTAGGTACCCAATGGTAAGGAAATCAATAGTGAAAAAAGGAATTGCAATTGTTAGCAGAGGTGATTTGGAGAATGCAGAAGAGGCAGCAAATGAGGTAAAGTACCCAAGAATTACATATGAACAACTAAAAGAAGCCACCGGAGGCTTCGGTGCTTCAAGCTTAATTGGTTCGGGCCGGTTTGGACAGGTCTACGAAGGAATGCTCCAAGATAGTACAAGAGTAGCTGTGAAGGTGTTGGACACAACACATGGTGAGATTTCAAGGAGCTTTAGAAGGGAATGTCAAATACTGAAAAAGATAAGGCACAGAAATTTAATAAGGATCATAACAATTTGTTGTAGGCCAGAATTTAATGCTCTTGTTTTTCCCTTGATGCCAAATAATAGCCTTGAGAGGCACCTATATCCAAGCCAAAGATTGAATGTGGTTCAATTACTAAGAATCTGCAGTGATGTAGCTGAGGGCATGGCCTATCTTCACCATTACTCTCCAGTGAAAGTAGTGCATTGTGATCTTAAACCAAGCAATATACTCCTTGATGAAGATATGACAGCTTTGATTACTGATTTTGGAATTTCAAGGCTTCTACAAAGTGATGAGAATACATCCACCAGTATCTCATCTTTCAGTTCAACAAATGCTTTGTTATGTGGCACCGTTGGTTATATTGCTCCCGAATACGGAATGGGAAAAGATGTTTCAACTGAGGGAGATGTTTACAGTTTTGGAGTAGTTGTGTTGGAGATGGTCTCAGGTAGACGCCCCACAGATGTACTCAGCCATGAAGGCTCAAGCTTGTGTGAGTGGCTCAAAAAACTGTACACACAACCACACCACCTTCAAAACTTTGTTCAACAAGCACTTCAAAGGTGCTATCCTTTTGGTCTGCCAAACCCTCACAACAAAGTTTGGAGAGATGTTATTCTGGAACTCATTGAGCTGGGGTTAATCTGCACTCAGCACAACCCTTCAACAAGACCAACCATGCACGATGTAGCACAAGAGATGGAGAGGTTAAAGGACTACCTTACTAAGTCAACCTCTCATCCAAGTCAATCTCAACGTGTTAATTCTTTAACTTATTAA 2934 0.4134 MGLFSLAVFLFFFLDTVHSTVLWKENAGIVNGKKSLVSFMSGIVSDPQNALDSWKSPGVHVCDWSGVRCNNASDMIVEVDLSGRSLGGTISPALANLSSLQILDLSGNFLVGQIPKEIGHLVQLRQLSLSGNFLEGHIPSEFGSLHNLDYLDLGSNHLEGEIPPSLFCNGTSLGYVDLSNNSLGGQIPLNKVCILKELQFLLLWSNKLSGKVPLALSNSTKLKWLDLGLNMLSGELPSKIVSNWPQLQFLYLSYNNFTSHDGNTNLEPFFASLVNLSHFQELELAGNNLGGKLPHSIGELPTSLQQLHLEKNFIYGSIPASIANLVNLSFLKLSSNLINGSIPPSLSHMNRLERIYLSNNSISGEIPSTLGGIQHLGLLDLSRNMLSGPIPDSFANLTQLRRLLLYDNQLSGTIPPSLGKCVNLEILDLSHNNITGLIPAEVAALGSLKLYLNLSNNNLHGSLPLELSKMDMVLAIDLSLNNLSGSIPPQLESCIALEYLNLSGNSFEGPLPYSLGQLLYIRSLDVSLNQLTGAIPQSMQLSPSLKELNFSFNKFSGKVSNKGAFSNLTIDSFLGNRGLCGPFKGMQQCHKKCSYHLVFLLIPVSLFGTPLLCILFRYPMVRKSIVKKGIAIVSRGDLENAEEAANEVKYPRITYEQLKEATGGFGASSLIGSGRFGQVYEGMLQDSTRVAVKVLDTTHGEISRSFRRECQILKKIRHRNLIRIITICCRPEFNALVFPLMPNNSLERHLYPSQRLNVVQLLRICSDVAEGMAYLHHYSPVKVVHCDLKPSNILLDEDMTALITDFGISRLLQSDENTSTSISSFSSTNALLCGTVGYIAPEYGMGKDVSTEGDVYSFGVVVLEMVSGRRPTDVLSHEGSSLCEWLKKLYTQPHHLQNFVQQALQRCYPFGLPNPHNKVWRDVILELIELGLICTQHNPSTRPTMHDVAQEMERLKDYLTKSTSHPSQSQRVNSLTY* 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1596 977 SMART serkin_6 665 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g1596 977 SUPERFAMILY L domain-like 271 363 - -
Pvu3g1596 977 Pfam Protein kinase domain 669 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g1596 977 Pfam Leucine rich repeat N-terminal domain 34 70 IPR013210 -
Pvu3g1596 977 ProSitePatterns Serine/Threonine protein kinases active-site signature. 783 795 IPR008271 GO:0004672|GO:0006468
Pvu3g1596 977 PANTHER LEUCINE-RICH RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN 22 956 - -
Pvu3g1596 977 ProSiteProfiles Protein kinase domain profile. 665 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g1596 977 Pfam Leucine rich repeat 351 410 IPR001611 GO:0005515
Pvu3g1596 977 SUPERFAMILY L domain-like 331 581 - -
Pvu3g1596 977 Gene3D Transferase(Phosphotransferase) domain 1 741 974 - -
Pvu3g1596 977 SMART LRR_typ_2 397 421 IPR003591 -
Pvu3g1596 977 SMART LRR_typ_2 276 300 IPR003591 -
Pvu3g1596 977 SMART LRR_typ_2 121 144 IPR003591 -
Pvu3g1596 977 SMART LRR_typ_2 325 349 IPR003591 -
Pvu3g1596 977 SMART LRR_typ_2 445 470 IPR003591 -
Pvu3g1596 977 SMART LRR_typ_2 145 169 IPR003591 -
Pvu3g1596 977 SMART LRR_typ_2 422 444 IPR003591 -
Pvu3g1596 977 SMART LRR_typ_2 195 218 IPR003591 -
Pvu3g1596 977 SMART LRR_typ_2 97 120 IPR003591 -
Pvu3g1596 977 SUPERFAMILY Protein kinase-like (PK-like) 647 952 IPR011009 -
Pvu3g1596 977 SUPERFAMILY L domain-like 41 260 - -
Pvu3g1596 977 ProSitePatterns Protein kinases ATP-binding region signature. 671 693 IPR017441 GO:0005524
Pvu3g1596 977 ProSiteProfiles Leucine-rich repeat profile. 423 444 IPR001611 GO:0005515
Pvu3g1596 977 CDD STKc_IRAK 671 955 - -
Pvu3g1596 977 Pfam Leucine Rich Repeat 497 516 IPR001611 GO:0005515
Pvu3g1596 977 Pfam Leucine Rich Repeat 423 441 IPR001611 GO:0005515
Pvu3g1596 977 Pfam Leucine Rich Repeat 99 121 IPR001611 GO:0005515
Pvu3g1596 977 Gene3D Ribonuclease Inhibitor 192 263 IPR032675 -
Pvu3g1596 977 Gene3D Ribonuclease Inhibitor 264 596 IPR032675 -
Pvu3g1596 977 Gene3D Ribonuclease Inhibitor 31 191 IPR032675 -
Pvu3g1596 977 ProSiteProfiles Leucine-rich repeat profile. 147 169 IPR001611 GO:0005515
Pvu3g1596 977 Gene3D Phosphorylase Kinase; domain 1 644 739 - -
Pvu3g1596 977 PANTHER OS04G0122200 PROTEIN 22 956 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1596 Pvu-Chr3 35875537 35878747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1596 34 971 Receptor kinase-like Gene Family AT5G20480 33.879 1.26e-160 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pvu3g1596 Pkinase 3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1596 - - gmx:100792446 1633.23