Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1563 ATGGGTAGGGGTGATGTCTTTGTGTCTCCACCAGAACAGCCACCATATTTTCTCTCACAGCCAAACTCACCTTTTCCTCCCACTGCTCGATCTGATAGTTTCAGTTTGAACGATAGGGCGTTGAAGGTTAGTCCAAGCATACTTTTGATCATTATAATTCTGGCTATTGTTTTCTTCATTTCTGGTCTGCTACACCTGCTGGTTAGATTTCTGTGGAGACCCCAAACTAGAGAGCCTGATGATTTAGACAATGCCACTGCTCTTCAAGGCCAATTGCAGCAACTCTTTCACCTCCATGATGCTGGGGTCGACCAGTCATTCATTGACACCCTCCCTGTGTTCCTCTACAAGGCCATCATAGGACTCAAAAACCCCTTTGACTGTGCCGTTTGTTTGTGTGAATTTGAACCTGAGGACAAGCTCAGGTTGCTTCCCAAATGTAGCCACGCTTTTCACATGGAGTGTATTGACACCTGGCTCTTGTCTCACTCTACTTGCCCTCTTTGTAGAGCCAGTTTGCTCCCTGAATTCTCTGCAAACAACTCATGTTCTCCTTATGTTCTTGTCCTAGAATCTGGGAGTGAGAGTTCTAGGGAGATTGTTCCTGAAAGAGAGGCTGCGGTTGGAAGGTCTAGTTCGGTTATGACCTCAAATTCTCGCCTTGGATGCCGTGGAGATAGTGAATTTGGATCAACCCGTGTGGATTTGAAATCAGGTGAGTTATTAAGTGAAACTCCTGATCCAACAGTACCAAATGGTGTGGAAAAAGTGGTTACTGTTAAGCTGGGGAAGTTTAAAAGTGTGGATGGTGGAGGTGATGGTGGGGCAGAGAGTAGTACTACAAACAATGTGGATTCTAGAAGGTGTTTTTCCATGGGGTCATTTGCTTATGTTATGGACGAGAGTTCCTCACTGCAAGTGCCCATTCGAACCCCAATCAAGAAGCAATCGAGTAAGAAGAAGTCTGGTTTGCCTTTGACTCCAGGACACAGGCCTGCAATGTCAGAATGTGACTGTGAGTCTAGAAGGGATTTCAAGTTTACAGCCTTTGGTGCAACTGTGGTTGAGGATGATGTTGCTAGTACTGGGACTGCAACTACAACTTGTAATGGGAATAGTGCTGCAATTGGAAGAATCAGAAAGGAAAGTTTTTCCATATCAAAGATTTGGCTCAGGGGGAAAAAGGATAAGCCAAATGCTGTGGCAGATTCATCTAGAAGGGCTGTTTCATTTCGCTTCCCGGCGAAGTCTAGTGCTGTTGCTGCTTCTGGTAGTGGTGATGATGATGATTTGAAAGGCAAGAATTCCAAGTTTGATACAAGCAGTACCATTTCTGAGATGGATATTGGAAAGTGGGAGAATGGAGGAGGAAGTCAGTTCGATTTAGATGAAGAAAACCAGAGTTGTTATAGTATGGATTCTTCTCAAGCTAGGGCGCCATCCTTTGCTAGAAGGACTTTGCTTTGGCTCACTGGAGGAAGACAGAACAAGGTTGTTCACTCCGTTTCCAACCTCTAG 1518 0.4499 MGRGDVFVSPPEQPPYFLSQPNSPFPPTARSDSFSLNDRALKVSPSILLIIIILAIVFFISGLLHLLVRFLWRPQTREPDDLDNATALQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPEFSANNSCSPYVLVLESGSESSREIVPEREAAVGRSSSVMTSNSRLGCRGDSEFGSTRVDLKSGELLSETPDPTVPNGVEKVVTVKLGKFKSVDGGGDGGAESSTTNNVDSRRCFSMGSFAYVMDESSSLQVPIRTPIKKQSSKKKSGLPLTPGHRPAMSECDCESRRDFKFTAFGATVVEDDVASTGTATTTCNGNSAAIGRIRKESFSISKIWLRGKKDKPNAVADSSRRAVSFRFPAKSSAVAASGSGDDDDLKGKNSKFDTSSTISEMDIGKWENGGGSQFDLDEENQSCYSMDSSQARAPSFARRTLLWLTGGRQNKVVHSVSNL* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1563 505 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 12 404 - -
Pvu3g1563 505 MobiDBLite consensus disorder prediction 1 25 - -
Pvu3g1563 505 MobiDBLite consensus disorder prediction 312 335 - -
Pvu3g1563 505 MobiDBLite consensus disorder prediction 419 439 - -
Pvu3g1563 505 Pfam Ring finger domain 127 170 IPR001841 -
Pvu3g1563 505 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Pvu3g1563 505 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 175 IPR013083 -
Pvu3g1563 505 SUPERFAMILY RING/U-box 107 178 - -
Pvu3g1563 505 CDD RING-H2_PA-TM-RING 127 170 - -
Pvu3g1563 505 SMART ring_2 128 169 IPR001841 -
Pvu3g1563 505 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 12 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1563 Pvu-Chr3 35365908 35367425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1563 35 505 C3H Transcription Factor Family AT2G18650 46.122 2.55e-102 311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g1563 3 35365908 35367425 Pvu3g1563 3 35365908 35367425 ECH