Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1562 ATGCCTCTTGCCACACACCACCCCCAATTCCAACCCCAACCCCAACCAAAACCTAATCCAAACCTCCTCTCTCTCTTCCTCAAACCCATCATTATGCTCCTTCTCACCTCCCTCTTCTTCCTCTTCATAGGCTTCGCCGCCTTCCTCCTCCTCAACCTCTTTCTCCTTGGCGGCGCCTTCCACCGCCTTCGCTTCCGCCCCTCCGCCGTCACTGCCACCGCTTCCAACGCCCTCCTCCCTCGCGAAATCAACAAGCTCCCTCGCTTCCGCCTCTCCCGGGGATCCCACATCCTAGCCGACTTCCCCTGCGTTGTCTGTTTAGACACCTTCCGCAACGGCCAGTGGTGCCGGAAACTCGCCGCCTGCGGTCACGTCTTTCACCGCAGGTGCGTCGACACGTGGCTCCTCAAAGTCGCCGCATGCCCCACGTGCCGTACACCCGTGCGATTAAACGCCGAAACTCCGGTACGTGACCCAACACTAGGTTCTGCTTTTGCCCAATTTCAAACCTGCGAAACTGACTCCAATGCTCTCGCCCTTTTATAG 546 0.5842 MPLATHHPQFQPQPQPKPNPNLLSLFLKPIIMLLLTSLFFLFIGFAAFLLLNLFLLGGAFHRLRFRPSAVTATASNALLPREINKLPRFRLSRGSHILADFPCVVCLDTFRNGQWCRKLAACGHVFHRRCVDTWLLKVAACPTCRTPVRLNAETPVRDPTLGSAFAQFQTCETDSNALALL* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1562 181 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 6 154 - -
Pvu3g1562 181 SMART ring_2 103 144 IPR001841 -
Pvu3g1562 181 PANTHER RING-H2 FINGER PROTEIN ATL56 6 154 - -
Pvu3g1562 181 SUPERFAMILY RING/U-box 95 151 - -
Pvu3g1562 181 Pfam Ring finger domain 103 145 IPR001841 -
Pvu3g1562 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 153 IPR013083 -
Pvu3g1562 181 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1562 17 155 C3H Transcription Factor Family AT2G18670 46.429 8.93e-32 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1562 - - pvu:PHAVU_003G150700g 327.405