LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu3g1559	ATGCTATCGAGATCTTGCTTGGGTCTTTTGAATTTGGTATCAGTGGATGATTACCAAGCGCTGGGACGGGTTCCGCGTGTGGTGACTACGGTGGCCGGAGACATACCGGAGTTGGACATTAACGCCATGGAAAATTCCGGATCCGACGAGTTGGTTTCGCCGATGCCGCGCGAGAGGAGGATCGTGGTGGCGAACCAGTTACCGATACGCGCGTTTCGTGAAGGGAAGAAATGGAGGTTCGAGTGGGACAGAGACAGCCTCGTCCTTCAGCTCAAAGACGGGTTCCCTTCGGATGTGGAAGTGTTGTACGTTGGTTCTTTGAAAGCAGAGATCGAAGCGTGCGAGCAAGAAGAAGTTGCTCAGTTACTCCTCGAAAGGTTTCGCTGCGTCCCAACGTTTCTACCCCCAGAGGTTCACAACAAATTCTATCATGGTTTCTGCAAGCATTACCTGTGGCCTCTCTTCCACTACATGCTGCCCATGTCGCCGAGCCAGGGCGCGCGCTTCGACCGTGAGCAGTGGAAGGCCTACGTCCTGGCGAACAAGATCTTCGCCGACAAGGTCACCGAGGTTATCAACCCAGACGAGGATTTTGTCTGGGTTCATGATTACCACCTCATGATCCTCCCCACTTTCCTCCGGAAGCGATTCCACCGCGTGAAGCTGGGGTTCTTCTTGCACAACACGTTTCCGTCCTCGGAGATATACCGGACCCTGCCTGTGCGTGAGGATATTCTCCGGGCGTTTCTCAACTGCGATTTGATCGGCTTCCACACGTTCGACTACGCGCGGCATTTTTTGTCGTGTTGCAGCAGAATGTTGGGGCTAGATTACGAGTCCAAGAGGGGTTACATTGGTTTGGATTACTACGGCAGGACCGTGACGATTAAGATCCTCCCCGCTGGGATCCACATGGGCCTCCTGGAGTCCGTGTTGTCGTTGCCGCATACTGCAACAAGGGTGAAGGAGTTGAAGAAGGAGTACGAGGGGAAGGTTGTGATATTGGGGGTGGATGACATGGACTTGTTCAAGGGGATTAGTTTGAAGTTCTTGGCTTTGGGGAAGCTTCTGGAAGCGGACGAAGGTTTGCGGGGTCGTGTTGTGTTGGTTCAGATTCTGAACGCTGCCAGGAGCAGAGGGAAGGATATTCAGGACGTGAAGAGCGAGAGCGAGGCTATTGCGAGGGAGATCAATGAGAAGTATTCGCAACCGGGGTACAAGCCTATTGTTTTCGTTAATGGACCAATTTCCACGCAGGAGAAGGCAGCGTATTACTCCATTTCCGAGTGTTGCGTCGTGAATGCTGTGAGGGATGGGATGAATTTGGTGCCTTACGAGTACACTGTTTGTAGGCAGGGGACTGTTGCTTTGGATAAGGCTCTTGGGGTTGAAGGCGAGGATAAGAAATCCCTTCAACAGAGCGTTATCATTGTGTCTGAGTTCATAGGGTGTTCCCCTTCTCTCAGTGGAGCCATCAGGGTTAATCCGTGGAACATTGATGAAGTCGCTGAGGCAATGAATTCGGCTGTAACAATGTCGGAGGCAGAGAAGCATTTGCGCCATGAGAAGCATTACAAGTACATTAGCTCTCATGATGTGGCTTACTGGGCAAGGAGTTTTGATCAGGATTTAGACAGAGCTTGTAGAGAGCATTATTCCAAGAGGTACTGGGGTGTTGGATTCGGATTGGGGTTTAGAATTGTTGCTCTAGATCCTACCTTTAGGAAGCTCTCTGTAGATCACATTGCCTCTGCTTATAGAGATACACACAGTCGGTTGATCCTTTTGGACTACGATGGCACCATGATGTCACCGGCCTCAATAAACAAGACTCCAAGCATGGAAGTTATTTCTGTCTTGAATTACTTATGCAGTGACCCGGAAAATATGGTGTTCATTGTGAGCGGCAGGGATAAGGATTGCTTGAGCAAATGGTTTTCTCCCTGTGAGAAATTGGGTCTCTCCGCTGAGCACGGTTACTTCAATAGGTGGAGTATGGATTCCCCTTGGGAGACTTGCGGATTGACAACCGATTTTGAATGGAAAATGATTGTAGAACCTGTGATGGCGCTTTATACAGAAGCAACGGATGGTTCCTTCATTGAACACAAGGAAAGCGCAATGGTGTGGCATCATCAAGAAGCAGATCCTTATTTTGGATCATGCCAAGCAAAAGAGCTTCTTGATCACTTGGAGAGTGTGCTGGCCAATGAGCCAGTTGTGGTTATAAGGGGACAACACATAGTTGAAGTTAAACCTCAGGGTGTGAGCAAGGGTAAAGTGGTTGAAGACATCATCTCAACAATGCGAAGTAAGGGAAAGTCACCAGATTTTCTACTATGCATAGGAGATGATCGCTCAGATGAAGATATGTTTGAAAGTATTGCTCGTTCGGTGTCTAATCCAGCTCTGCCAACCATTTCCAAAGTTTTTGCATGCACTGTTGGACAGAAACCAAGTATGGCAGAATACTATTTGGATGACACTAGCGAAGTAATCAATTTACTTGAAGGACTTGCATGCCCATCAGCACCTTCCTCCTCCATAATAACTTCTCAGGAATTGTGA	2568	0.4891	MLSRSCLGLLNLVSVDDYQALGRVPRVVTTVAGDIPELDINAMENSGSDELVSPMPRERRIVVANQLPIRAFREGKKWRFEWDRDSLVLQLKDGFPSDVEVLYVGSLKAEIEACEQEEVAQLLLERFRCVPTFLPPEVHNKFYHGFCKHYLWPLFHYMLPMSPSQGARFDREQWKAYVLANKIFADKVTEVINPDEDFVWVHDYHLMILPTFLRKRFHRVKLGFFLHNTFPSSEIYRTLPVREDILRAFLNCDLIGFHTFDYARHFLSCCSRMLGLDYESKRGYIGLDYYGRTVTIKILPAGIHMGLLESVLSLPHTATRVKELKKEYEGKVVILGVDDMDLFKGISLKFLALGKLLEADEGLRGRVVLVQILNAARSRGKDIQDVKSESEAIAREINEKYSQPGYKPIVFVNGPISTQEKAAYYSISECCVVNAVRDGMNLVPYEYTVCRQGTVALDKALGVEGEDKKSLQQSVIIVSEFIGCSPSLSGAIRVNPWNIDEVAEAMNSAVTMSEAEKHLRHEKHYKYISSHDVAYWARSFDQDLDRACREHYSKRYWGVGFGLGFRIVALDPTFRKLSVDHIASAYRDTHSRLILLDYDGTMMSPASINKTPSMEVISVLNYLCSDPENMVFIVSGRDKDCLSKWFSPCEKLGLSAEHGYFNRWSMDSPWETCGLTTDFEWKMIVEPVMALYTEATDGSFIEHKESAMVWHHQEADPYFGSCQAKELLDHLESVLANEPVVVIRGQHIVEVKPQGVSKGKVVEDIISTMRSKGKSPDFLLCIGDDRSDEDMFESIARSVSNPALPTISKVFACTVGQKPSMAEYYLDDTSEVINLLEGLACPSAPSSSIITSQEL*	856

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu3g1559	855	Gene3D	-	591	705	IPR023214	-
	Pvu3g1559	855	Gene3D	-	721	848	IPR023214	-
	Pvu3g1559	855	TIGRFAM	T6PP: trehalose-phosphatase	591	839	IPR003337	GO:0003824\|GO:0005992
	Pvu3g1559	855	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	593	797	IPR006379	-
	Pvu3g1559	855	Gene3D	Glycogen Phosphorylase B;	312	529	-	-
	Pvu3g1559	855	Gene3D	Glycogen Phosphorylase B;	52	311	-	-
	Pvu3g1559	855	CDD	HAD_TPP	593	834	-	-
	Pvu3g1559	855	SUPERFAMILY	HAD-like	592	839	IPR036412	-
	Pvu3g1559	855	Pfam	Glycosyltransferase family 20	59	545	IPR001830	GO:0003824\|GO:0005992
	Pvu3g1559	855	Pfam	Trehalose-phosphatase	595	830	IPR003337	GO:0003824\|GO:0005992
	Pvu3g1559	855	PANTHER	ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 11-RELATED	1	844	-	-
	Pvu3g1559	855	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	1	844	IPR001830	GO:0003824\|GO:0005992
	Pvu3g1559	855	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	59	549	-	-
	Pvu3g1559	855	CDD	GT20_TPS	59	544	IPR001830	GO:0003824\|GO:0005992

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu3g1559	Pvu-Chr3	35303997	35307406	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu3g1559	10	846	Trehalose Biosynthesis Gene Families	AT2G18700	67.616	0.0	1185

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu3g1559	K16055		-	gmx:100810498	1620.14