Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g1552 ATGTGTTTTCAGTGGCACAGACTTGTTTCACCAACTGTAAATGGATCAAATGGTAGATTGAAGAATGGAGAGATAAAGTTAAGAGTAACGGTACCCATGCATGGTTTCCCCCAATTTGTGAATGTAGTTTGGGACCCTTCTCAACAAAAGTACACCGTTTCTGGATATTGCGTGGATGTTTTGAATGCCGTTGTAACCCGCTTACCCTTCAATGTTTCTCTACATGTTGTACCTTCTGTTGTTGAACCAACCCATGGTTCCGGATTTCACGATGCATATCTAGAACACTTCCTGTCAGAGTATGATGCGGTGGTAGGGGATATAACAATCCTAGCCAACCGTTCAAACTACGTAGATTTCACGGTGCCATATATTGGATCGGGAGTTAAAATGGTAGTACCAGTTCAACATGGGAGGGATCAAAACATGTGGACTTTTGTCAAACCCTTCAGTTGGGATCTTTGGTTGAGAATAATCATCATCTCTACCTTCATAGGGCTTGCCATACTCATCATGGAAAGAAATGTAAGCGCGCTGCCTAATCAAGAGGGTTCTCCAAATCAGAAAAAGCTTTGCCCTGCAACCATCTTATTGTTTCCAATCTCACAAGCCATTCTTCCCGAAAAACAAGTAGTGGTAAAAAGATGGTCAAGATTTGTGCTGATGGTTTGGCTTCTATTGGCGTTGGTCCTCATGCAAAGTTACACTGCCAACTTGACTTCTATATTGACCTTGGATCAACTGCGACCCAGTTTAAAGAACGTTAATGATCTAAGGAGAGGGGGTTATTACGTTGGATACCAGTCTGGGTCTTTTGTTTACGATGTTCTGATTGACCAATTTAAGTTTGACCCGTCCAAACTAAGGCCATATAGCACCATTGCTGAGTATCATGATGCTCTAAAGCTTGGAAGCAAAAATGGGGGTGTTGCAGCTATATTCGATGAAGTGCCCTACCTTAAACTCTACCTTAAAGAATACGGATCCAATTACATTTTGGCTGGCCCCGAATATAGAAACGCTGGGTTTGGTTTTGTATTCCCTTTAAACTCCAATCTCACGGATTACTTTTCGAGGGGCATCCTGAATGTGATTGAAAGTGGAATAATGAATGAGATCGAGGAAAAATATTTTGGAAAGAATGAGATTGGAGGAGAAGACTCGTCTGCGGAAATATCTTCTGCTCCTCTCAGTCTCAGCTTTCATAGCTTCGCGGGGCTTTTCATTATTGCTGGGATTTCTACTTTGTTAGCGTTGTTGATTTCAGAAAGATTTATTTGCCAAAGACTCCTTTTGACGGCTAAAGCATTCACTCAGAGGTATGTCCCCCATTTTTCCAATCCAGTTCAAGATTCAACTCACGGAACAGTGGCTTAA 1377 0.4183 MCFQWHRLVSPTVNGSNGRLKNGEIKLRVTVPMHGFPQFVNVVWDPSQQKYTVSGYCVDVLNAVVTRLPFNVSLHVVPSVVEPTHGSGFHDAYLEHFLSEYDAVVGDITILANRSNYVDFTVPYIGSGVKMVVPVQHGRDQNMWTFVKPFSWDLWLRIIIISTFIGLAILIMERNVSALPNQEGSPNQKKLCPATILLFPISQAILPEKQVVVKRWSRFVLMVWLLLALVLMQSYTANLTSILTLDQLRPSLKNVNDLRRGGYYVGYQSGSFVYDVLIDQFKFDPSKLRPYSTIAEYHDALKLGSKNGGVAAIFDEVPYLKLYLKEYGSNYILAGPEYRNAGFGFVFPLNSNLTDYFSRGILNVIESGIMNEIEEKYFGKNEIGGEDSSAEISSAPLSLSFHSFAGLFIIAGISTLLALLISERFICQRLLLTAKAFTQRYVPHFSNPVQDSTHGTVA* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g1552 458 Gene3D - 144 277 - -
Pvu3g1552 458 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 10 448 - -
Pvu3g1552 458 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 448 - -
Pvu3g1552 458 SMART GluR_14 26 380 IPR001320 GO:0015276|GO:0016020
Pvu3g1552 458 Gene3D - 21 143 - -
Pvu3g1552 458 SUPERFAMILY Periplasmic binding protein-like II 26 381 - -
Pvu3g1552 458 Pfam Ligand-gated ion channel 381 413 IPR001320 GO:0015276|GO:0016020
Pvu3g1552 458 Gene3D - 293 341 - -
Pvu3g1552 458 Pfam Bacterial extracellular solute-binding proteins, family 3 52 380 IPR001638 -
Pvu3g1552 458 CDD GluR_Plant 26 378 - -
Pvu3g1552 458 Gene3D - 342 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g1552 Pvu-Chr3 35152761 35154915 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g1552 26 448 Ion Channels AT5G11210 36.471 4.15e-85 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g1552 K05387 - gmx:100807817 604.749